Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_B12
         (931 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0513 - 16681227-16683936,16685572-16685966                       29   4.0  
11_06_0612 + 25507208-25507269,25507690-25508275                       28   9.2  

>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 262  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 360
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>11_06_0612 + 25507208-25507269,25507690-25508275
          Length = 215

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 816 PGXPPER*VXVXNSNNXHXGQHLQLXXQFCXRCWGKSRELE 694
           P  PPER   +   N     + ++L  ++C RC G+SR  E
Sbjct: 67  PAPPPER--LLGRCNRILRRRLIRLRLRYCRRCGGRSRGAE 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,682,454
Number of Sequences: 37544
Number of extensions: 412628
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)