Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_B03
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.50 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.66 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 523 PXPXLXPPXGPPPPPXXXXFXPPP 594
           P P +  P  PPPPP      PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
 Frame = +2

Query: 497 PPPXXXFFXPPXXXXPPX----GPPPPPXXXXFXPPP 595
           PPP      PP    PP     GPPPPP      PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPP 783



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 497 PPPXXXFFXPPXXXXPPXGPPPPPXXXXFXPPPXGGXKKKXPP 625
           PPP       P     P  PP P       PPP  G     PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 497 PPPXXXFFXPPXXXXPPXGPPPPPXXXXFXPPP 595
           PPP      P     P   PPP P      PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 542 PPXGPPPPPXXXXFXPP 592
           PP  PPPPP    F PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +1

Query: 529 PXLXPPXGPPPP---PXXXXFXPPPXGGXKKK 615
           P   PP  PPPP   P      PPP G  KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 523 PXPXLXPPXGPPPPP 567
           P P   PP  PPPPP
Sbjct: 14  PPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 497 PPPXXXFFXPPXXXXPPXGPPPPP 568
           PPP    F PP    PP  PPPPP
Sbjct: 11  PPPPPPGFEPP--SQPP--PPPPP 30


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 612 FFXPPXGGGXKXXXXG-GGGGPXGGXQXXGGXKKXXXGGGK 493
           F  P  GGG +    G GG G  GG    GG +    GG +
Sbjct: 440 FSTPRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGAR 480


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
 Frame = +1

Query: 499  PPXXXFFXPXPXLXPPXGPPPP---PXXXXFXPPPXGGXKKKXPPLXXXXXP 645
            PP        P +  P  PPPP   P      P P G      PPL     P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
 Frame = +2

Query: 464  FGGGXQKXXFXPPPXXXFFXPPXXXXPPXGPPPP---PXXXXFXPPPXGGXKKKXPP 625
            FGG         PP       P     P  PPPP   P      P P G      PP
Sbjct: 1678 FGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +1

Query: 499 PPXXXFFXPXPXLXPPXGPPPPPXXXXFXPPPXGGXKKKXPP 624
           PP      P P   PP     PP      PP       K PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,462
Number of Sequences: 5004
Number of extensions: 30587
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)