Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_A24
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    30   0.40 
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    29   0.70 
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    28   1.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.8  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.7  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   4.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.5  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    26   6.5  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   8.6  

>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = +1

Query: 382 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 537
           K KE +E   Q ++ +ER  E LRK   D  K+      + +AA+     + +  E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186

Query: 538 AKKVSSNVXETNEKLAPKIK 597
            K +      T +KL  KI+
Sbjct: 187 YKDMEQENASTIQKLTSKIR 206


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 364 LGDANGKAKEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQK 534
           + +A  KA+++LEQ+    +   E L K H +    E+   + +EKL A ++   + S++
Sbjct: 52  INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111

Query: 535 L 537
           L
Sbjct: 112 L 112


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +1

Query: 382 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 561
           K+++ LE S Q +E    E +   P+V++     +EK ++ V+   +E     +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185

Query: 562 XETNEKLAP 588
             ++  ++P
Sbjct: 186 RSSSRSISP 194


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
 Frame = +1

Query: 382  KAKEALEQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKK 546
            K +E ++   +NI+   E+LRK+   +   +  A  LRE +        T++  +     
Sbjct: 679  KKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHS 738

Query: 547  VSSNVXETNEKLAPKIKAAYDDFAKNTXXVIKKIQEAANAKQ-*ASILNSH 696
              S+   TN  L+ ++  + +D  + T  V    Q++   KQ   S++NS+
Sbjct: 739  SLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 385 AKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 489
           A E   +++ +IER+A    K A  + E+ ATALRE
Sbjct: 157 ASERAREAQSSIERSASLREKQAREEAERAATALRE 192


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +1

Query: 382 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKV 549
           KA + LE+  ++ E + EE+   H    +  T+ +   +   +  +QE  ++ K +
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMI 408


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 435 LGRALDVLPRLFQSLLGLAVRVSERXPGDSW 343
           +G  +  L RLF SL GL    ++  PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 382 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQ 531
           KAKE  ++ R   +RTA E+RK    +E+     R +  A  Q    + Q
Sbjct: 164 KAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQ 213


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 397 LEQSRQNIERTAEELRKAHPDVEK 468
           +EQ+R   E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 412 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 290
           AST+ K PWP  + L  +P     + +  CS+ +E  ++ +
Sbjct: 38  ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,314
Number of Sequences: 5004
Number of extensions: 36190
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)