Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_A15
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.24 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    31   0.32 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.74 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.98 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.9  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   5.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +2

Query: 851 PSNPXPXXPXP---PPXXPPXPPPP 916
           P NP P  P P   PP  PP PPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +2

Query: 842  LTXPSNPXPXXPXPPPXXPPXPPPPXP*XLLFXSSTRITP 961
            LT PSN       P P  PP  PPP P   +  S T   P
Sbjct: 948  LTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPP 987



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 809  PPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPP 913
            PP   P  G     P +  P  P P    PP PPP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 806  SPPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPPPXP 922
            S P   P P S +  PS P P    P P     PP P P
Sbjct: 1061 SAPPPVPAPSSEI--PSIPAPSGAPPVPAPSGIPPVPKP 1097



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 851  PSNPXPXXPXPPPXXPPXPPP 913
            PS+  P  P P    PP PPP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPP 1194



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 806  SPPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPP 913
            +PP   P     +  PS   P  P P    PP P P
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 806  SPPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPP 913
            +PP   P  G     P +  P  P P    PP P P
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 809  PPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPP 913
            PP   P     +  PS   P  P P    PP P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 806 SPPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPPPXP 922
           S P+    P      PS   P    P    PP PPPP P
Sbjct: 159 SAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 830 PGSYLTXPSNPXPXXPXPPPXXPPXPP 910
           P +Y    ++P P  P PPP  P  PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPP--PTLPP 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
 Frame = +2

Query: 824 PXPGSYLTXPSNPXPXXPXPPPXXP------PXPPPPXP 922
           P P      P  P    P PPP  P      P PPPP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +2

Query: 812 PHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPPPXP 922
           P   P P   +  P  P P  P      PP PPPP P
Sbjct: 748 PIPVPPPAPIMGGPP-PPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 806 SPPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPPPXP 922
           SPP   P P + +     P P    PP      PPPP P
Sbjct: 731 SPP---PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -2

Query: 921 GXGGGGXGGXXGGGXGXXGXGLEGXVR*EPGXGXRXGG 808
           G  GGG GG  GGG G    G  G      G G   GG
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -2

Query: 921 GXGG--GGXGGXXGGGXGXXGXGLEGXVR*EPGXGXRXGG 808
           G GG  GG GG  GG  G  G G  G      G G   GG
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 811  PXPXSXPRLLPYXPFQPPXXXXPTPPXXPPTPPXSXP 921
            P P   P  +P  P  PP    P     PP P  S P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +2

Query: 806  SPPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPPP 916
            +P H    P       + P    P PPP     PPPP
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +2

Query: 803  TSPPHRXPXPGS-YLTXPSNPXPXXP-XPPPXXPPXP--PPPXP*XLLFXSSTRITP 961
            ++PP R        ++ P+ P P     PPP  PP P  PP  P   L  SS    P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 921 GXGG--GGXGGXXGGGXGXXGXGLEGXVR*EPGXGXRXGG 808
           G GG  GG GG  GGG G  G GL G      G G   GG
Sbjct: 229 GPGGFEGGPGGF-GGGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = -2

Query: 921 GXGGGGXGGXXGGGXG-XXGXGLEGXVR*EPGXGXRXGG 808
           G  GGG GG  GG  G   G G  G      G G   GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG 222


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -2

Query: 921 GXGGGGXGGXXGGGXGXXGXGLEGXVR*EPGXGXRXG 811
           G GG   GG  GG  G  G G  G  R     G R G
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 824 PXPGSYLTXPSNPXPXXPXPPPXXPPXPPPP 916
           P P S L  P++  P    PPP     PP P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +3

Query: 618 PPXHXXXQHPHTNYPPLPXXXXPLP---XPXPXRPLLLPXXLPP 740
           PP       P T+ PP P    P P    P P +   +P  LPP
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 808 PPXPXSXPRLLPYXPFQPPXXXXPTPPXXPPTPPXSXP 921
           PP   + P   P    +PP    P P   PP+P  + P
Sbjct: 124 PPSAPAPPT--PQSELRPPTSAPPRPSIPPPSPASAPP 159


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +2

Query: 806 SPPHRXPXPGSYLTXPSNPXPXXPXPPPXXPPXPPPP 916
           S P   P P      P  P P  P PPP   P P  P
Sbjct: 452 SAPIAPPLPAGMPAAPPLP-PAAPAPPPAPAPAPAAP 487



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +2

Query: 812 PHRXPXPGSYLTXPSNPX--PXXPXPPPXXPPXPPPPXP 922
           P   P P S    P  P   P  P  PP  P  PP P P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 824 PXPGSYLTXPSNPXPXXPXPPPXXPPXPPPPXP 922
           P  G+     + P P  P  PP  PP  PP  P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +1

Query: 808 PPXPXSXPRLLPYXPFQPPXXXXPTPPXXPPTPPXSXP 921
           PP P   PR  P    QPP          PP PP + P
Sbjct: 361 PPPPP--PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 836  SYLTXPSNPXPXXPXPPPXXPPXPPPP 916
            S ++ PS P       P   PP PPPP
Sbjct: 1075 SNISKPSAPVANNVSKPSAVPPPPPPP 1101


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 963 LGVIRVEEXKRXXXGXGGGGXGGXXGGGXGXXG 865
           +G   ++       G GG G GG  G G G  G
Sbjct: 213 MGAAGIDPMSLMGGGLGGAGLGGLGGAGLGGFG 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,928
Number of Sequences: 5004
Number of extensions: 33377
Number of successful extensions: 322
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)