Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_A12
         (1341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.16 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = +3

Query: 960  PXQKXXPTXXXXPXPRPXPPXXPPXXXEPXHXPTXPHXTXXAPRXRXPXRR 1112
            P Q   PT    P   P PP  PP    P   P  P     AP    P  R
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
 Frame = +3

Query: 960  PXQKXXPTXXXXPXPRPXPPXXPPXXXEPXHXPTXPHXTXXAPRXRXPXRRXXXXXPXXH 1139
            P  K        P P P P    P    P   P  P     AP    P  +     P   
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP-----APSGIPPVPKPSVAAPPVP 1105

Query: 1140 KPXT---PNPAPXXAPP 1181
            KP     P PAP  APP
Sbjct: 1106 KPSVAVPPVPAPSGAPP 1122



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
 Frame = +3

Query: 1002 PRPXPPXXPPXXXEPXHXPTXPHXTXXAPRXRXPXRRXXXXXPXXHKPXTPNPA---PXX 1172
            P P P   PP        P  P  +   P    P        P    P  P P+   P  
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 1173 APPXALXLVP 1202
             PP     VP
Sbjct: 1211 PPPSTAPPVP 1220



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/60 (28%), Positives = 18/60 (30%)
 Frame = +3

Query: 1002 PRPXPPXXPPXXXEPXHXPTXPHXTXXAPRXRXPXRRXXXXXPXXHKPXTPNPAPXXAPP 1181
            P P P   PP        P  P  +   P    P        P    P  P P P  APP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP--PVPVPSGAPP 1141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.137    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,596
Number of Sequences: 5004
Number of extensions: 13285
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 737243038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)