Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_A12
         (1341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   6.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   8.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   8.0  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
            determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 14/53 (26%), Positives = 14/53 (26%)
 Frame = +3

Query: 1044 PXHXPTXPHXTXXAPRXRXPXRRXXXXXPXXHKPXTPNPAPXXAPPXALXLVP 1202
            P   P   H     PR   P        P       P P P   PP A    P
Sbjct: 343  PVPVPVPIHCGNFPPRPMGPWISIQEQVPRFRYIGPPTPFPRFIPPNAYRFRP 395


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
            determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 14/53 (26%), Positives = 15/53 (28%)
 Frame = +3

Query: 1044 PXHXPTXPHXTXXAPRXRXPXRRXXXXXPXXHKPXTPNPAPXXAPPXALXLVP 1202
            P   P   +     PR   P        P       P P P   PP A  L P
Sbjct: 123  PVPVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRP 175


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
            determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 14/53 (26%), Positives = 15/53 (28%)
 Frame = +3

Query: 1044 PXHXPTXPHXTXXAPRXRXPXRRXXXXXPXXHKPXTPNPAPXXAPPXALXLVP 1202
            P   P   +     PR   P        P       P P P   PP A  L P
Sbjct: 123  PVPVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRP 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.137    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,964
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46344318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)