Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_A08
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    61   2e-10
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.51 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    28   2.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   8.2  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   8.2  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   8.2  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
 Frame = +2

Query: 185 NVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGA--KDSNSKDLR 358
           N  RT+D+ +   K ++ +++ N G      + +  + +   ++  +    K+   K   
Sbjct: 26  NAIRTIDLRSTYTKTLTSLIIVNEGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEKKGTN 85

Query: 359 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 538
             +     YD      + L+ P+  G +  ++++      ++P P A+ Q E+Q++ Y+ 
Sbjct: 86  PIKVNNNVYD------IPLQPPVKPGESRTLLIQAGLDGGVRPLPAAVDQDEEQYLVYLT 139

Query: 539 NLYTYSPYYTSTQKTSVILNTKTVESFT 622
            LY  SPY T  Q+T +IL +  ++++T
Sbjct: 140 TLYLDSPYTTDLQRTRLILPSAKIDTYT 167


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
 Frame = +2

Query: 200  VDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRLA 364
            VD+ +QL++++ KIVL+ S  S   +     FL A++      + +I   D    D  +A
Sbjct: 994  VDLPSQLIELLEKIVLQPSSFSENANLQNLLFLTAIKADKSRVMEYIDKLDKYDVD-EIA 1052

Query: 365  ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 514
            E  ++   Y + +R+      +  A   +V + V     Q Y   + Q E
Sbjct: 1053 EIAIENGLYEEAFRIYKIHNKHEQAMKVLVEDIVSLDRAQDYAETVEQPE 1102


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 612 NHLPXVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKN 725
           N LP +  F   +  + + PYAN+  F E  +++H  N
Sbjct: 459 NVLPKLAEFRN-NNFVRFSPYANITSFRENMINVHLSN 495


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +2

Query: 164  SSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKS 265
            SSDI   N+D T DISTQ     S +   NSG S
Sbjct: 1303 SSDIPKANIDFTNDISTQNTFPASPV--SNSGFS 1334


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 547 IQIANIFHKLVFLLSYSCRIW 485
           + IA +F  L+F +S+ C IW
Sbjct: 277 VVIAFVFLSLIFFISFICPIW 297


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 158 TISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHF 280
           T+    K+KN     ++    VK+   ++ E++ KS+VKH+
Sbjct: 132 TLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHY 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,367
Number of Sequences: 5004
Number of extensions: 71001
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)