Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_A08
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.92 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.92 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   2.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 493 DSYNSARRPVCEICWQFVYILPVLYLH 573
           D Y+    PVC +C+  +Y   ++YLH
Sbjct: 405 DKYSRIVFPVCFVCFNLMYW--IIYLH 429


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 493 DSYNSARRPVCEICWQFVYILPVLYLH 573
           D Y+    PVC +C+  +Y   ++YLH
Sbjct: 405 DKYSRIVFPVCFVCFNLMYW--IIYLH 429


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 663 YGPYANVGPFTEKELSIHYKNNS-PFLTVTRVE 758
           Y P+   GP TEK   ++  +NS PF+  T +E
Sbjct: 293 YNPFTPFGPVTEK---VNNDSNSLPFIDRTPIE 322


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 663 YGPYANVGPFTEKELSIHYKNNS-PFLTVTRVE 758
           Y P+   GP TEK   ++  +NS PF+  T +E
Sbjct: 293 YNPFTPFGPVTEK---VNNDSNSLPFIDRTPIE 322


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 172 YKVKKCRSHSRYIDPTRKSSIKNSL 246
           YK  +CR+  R    TR S+ K  L
Sbjct: 176 YKTYQCRTKHRLTGETRLSATKGRL 200


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 493 DSYNSARRPVCEICWQFVY 549
           D Y+    PVC +C+  +Y
Sbjct: 343 DKYSRIVFPVCFVCFNLMY 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,925
Number of Sequences: 438
Number of extensions: 5028
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)