Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_A04
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   8.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.6  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 402 YFSKLPTSKILSSAGCVXSIVNFKLIFRLMPLPRILPP 515
           Y+   P   + S       I  F+ I    P PR +PP
Sbjct: 119 YYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 402 YFSKLPTSKILSSAGCVXSIVNFKLIFRLMPLPRILPP 515
           Y+   P   + S       I  F+ I    P PR +PP
Sbjct: 119 YYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 402 YFSKLPTSKILSSAGCVXSIVNFKLIFRLMPLPRILPP 515
           Y+   P   + S       I  F+ I    P PR +PP
Sbjct: 119 YYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 402 YFSKLPTSKILSSAGCVXSIVNFKLIFRLMPLPRILPP 515
           Y+   P   + S       I  F+ I    P PR +PP
Sbjct: 119 YYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 402 YFSKLPTSKILSSAGCVXSIVNFKLIFRLMPLPRILPP 515
           Y+   P   + S       I  F+ I    P PR +PP
Sbjct: 119 YYGNFPPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 459 IVNFKLIFRLMPLPRILPP 515
           I  F+ I  L P PR +PP
Sbjct: 142 IPRFRHIGPLTPFPRFIPP 160


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 459 IVNFKLIFRLMPLPRILPP 515
           I  F+ I  L P PR +PP
Sbjct: 383 IPRFRHIGPLTPFPRFIPP 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,891
Number of Sequences: 438
Number of extensions: 3217
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)