Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_A03
(883 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 24 1.6
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 24 1.6
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 24 2.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 24 2.1
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 24 2.1
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 24 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.8
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 3.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 3.7
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 8.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 8.6
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 202 RAREHITITKNTHPTSNRSHGYYVIYSNNYK 110
+++EH I+ ++ + ++ Y +Y NNYK
Sbjct: 75 KSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 202 RAREHITITKNTHPTSNRSHGYYVIYSNNYK 110
+++EH I+ ++ + ++ Y +Y NNYK
Sbjct: 75 KSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 279 GAPNSGKSTLINKIIDRKICAASNKVHTTT 368
G P +G +T N+I+ C + HTTT
Sbjct: 411 GGPPTGATTGPNEIVTCTNCGPNPCTHTTT 440
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 279 GAPNSGKSTLINKIIDRKICAASNKVHTTT 368
G P +G +T N+I+ C + HTTT
Sbjct: 397 GGPPTGATTGPNEIVTCTNCGPNPCTHTTT 426
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 279 GAPNSGKSTLINKIIDRKICAASNKVHTTT 368
G P +G +T N+I+ C + HTTT
Sbjct: 431 GGPPTGATTGPNEIVTCTNCGPNPCTHTTT 460
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 279 GAPNSGKSTLINKIIDRKICAASNKVHTTT 368
G P +G +T N+I+ C + HTTT
Sbjct: 380 GGPPTGATTGPNEIVTCTNCGPNPCTHTTT 409
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 519 VGVVHDASCKYIRESLHKDVVEM 587
V V HD SC Y+ + K +M
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKM 113
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 519 VGVVHDASCKYIRESLHKDVVEM 587
V V HD SC Y+ + K +M
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKM 113
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.4 bits (48), Expect = 2.8
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Frame = +3
Query: 213 YSFQPQHAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCY 392
Y F P + + +++ +IG P++G I ++ + N T K
Sbjct: 828 YMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRP 887
Query: 393 CNDTQIVFLDTPGVVTDREQKKYNLPP-SMLGSC-HKSLRCADVVGVVHDASCKYIRESL 566
+ V + ++ E K L P +L SC C+ +V V + K +++
Sbjct: 888 ASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSSLVDVSTPVNKKVYKQND 947
Query: 567 HKDVVEMLNSVQDMPSFL 620
+ +V+ +S SFL
Sbjct: 948 Y--IVDESSSSSFYSSFL 963
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 205 IRAREHITITKNTHPTSNRSHG 140
I+ E ++ NTH N+SHG
Sbjct: 677 IKTTEKLSTDPNTHFQVNQSHG 698
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.7
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -1
Query: 202 RAREHITITKNTHPTSNRSHGYYVIYSNNYK 110
+++EH I+ ++ + ++ Y +Y NNY+
Sbjct: 75 KSKEHKIISSLSNNYNYNNNNYKKLYCNNYR 105
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.0 bits (47), Expect = 3.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 696 IAGNPIPGPTNPNKQERGFSHFSD 767
++G+P P P P ++ S F+D
Sbjct: 1853 VSGSPEPPPPPPRNHDQNNSSFND 1876
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 261 VHVAIIGAPNSGKSTLINKII 323
+++ +IG +SGKST +I
Sbjct: 8 INIVVIGHVDSGKSTTTGHLI 28
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 519 VGVVHDASCKYIRESLHKDVVEM 587
V V HD SC Y+ + K ++
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKI 113
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 519 VGVVHDASCKYIRESLHKDVVEM 587
V V HD SC Y+ + K ++
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKI 113
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 261 VHVAIIGAPNSGKSTLINKII 323
+++ +IG +SGKST +I
Sbjct: 8 INIVVIGHVDSGKSTTTGHLI 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,511
Number of Sequences: 438
Number of extensions: 6510
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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