Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P24
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    29   1.1  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   2.0  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    28   2.0  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   8.1  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 435 LGRALDVLPRLFQSLLGLAVRVSERSPGDSW 343
           +G  +  L RLF SL GL    ++ SPG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/53 (24%), Positives = 33/53 (62%)
 Frame = +2

Query: 458 NVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXRL 616
           N ++ +   ++KL AA++   +E ++L  K+S ++Q+  +  AP+ + ++ R+
Sbjct: 64  NKKQTSKKAKDKLAAALKAQARE-ERLDTKISKSLQKQEKLKAPRRRISFNRV 115


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 470 NATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXRLREE 625
           N   L+    A+  + V+E          ++ E NE+L+  +++AY +L EE
Sbjct: 82  NVEKLQTVSHASTLHDVEEFYTSHSAKPLDISEINERLSEAVQSAYTKLNEE 133


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 412 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 290
           AST+ K PWP  + L  +P     + +  CS+ +E  ++ +
Sbjct: 38  ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,756
Number of Sequences: 5004
Number of extensions: 39840
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)