Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P21
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    36   0.010
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.2  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 439 QNYTFQTEVNRMMKLIINSLYRNKEIXL 522
           + + F+ E++++M LIIN++Y NKEI L
Sbjct: 5   ETFKFEAEISQLMSLIINTVYSNKEIFL 32


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 263 PESSRTPSPKSQICFIAGVKNIQRDLDVNYSILNNCRKC*LTQVPSFN 120
           P ++   SP S+   +AG  N+Q  +D+ +   NN +K  +T V + N
Sbjct: 311 PRNTLIFSPNSRYILLAGFGNLQGSIDI-FDAANNMKK--ITTVEAAN 355


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 603 PTPXSASASXXEPPXA-GCCXSSTPAXRMNPPRPHSTTSGTIXNXGPPRDSPVP 761
           P P  +  +  +PP   G   SS P     PP P S  +G+I      R +P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPP---PPPPRSNAAGSIPLPPQGRSAPPP 363


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
 Frame = +3

Query: 606 TPXSASASXXEPPXAGCCXSSTPAXRMNPPRPHSTTS----GTIXNXGPPRDSPVPXCKT 773
           T  S + S   PP  G    STP     PP   S+TS     T  +      +P+P   T
Sbjct: 111 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTST 170

Query: 774 G--XKXGXPPT 800
                   PPT
Sbjct: 171 SCTTSTSIPPT 181



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
 Frame = +3

Query: 606 TPXSASASXXEPPXAGCCXSSTPAXRMNPPRPHSTTS----GTIXNXGPPRDSPVPXCKT 773
           T  S + S   PP  G    STP     PP   S+TS     T  +      SP+P   T
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,467
Number of Sequences: 5004
Number of extensions: 42165
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)