Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_P19
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 160 2e-40
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 133 3e-32
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 76 8e-15
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 56 9e-09
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 39 0.001
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 37 0.005
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 36 0.011
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 33 0.057
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 33 0.057
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 33 0.075
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 31 0.17
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 31 0.23
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 29 0.70
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 29 0.92
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 2.1
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 28 2.1
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 3.7
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 4.9
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 4.9
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 6.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 6.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.5
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 160 bits (389), Expect = 2e-40
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +3
Query: 147 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVXTVEYKN 326
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 327 ISFTVWDVGGQDKIXPLWRHYLQNTXG 407
ISFTVWDVGGQDKI PLWRHY QNT G
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQG 87
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 475 RXXPQXEXXDAXLXIFANKQDL 540
R + E DA L +FANKQDL
Sbjct: 109 RMLNEDELRDALLLVFANKQDL 130
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 133 bits (322), Expect = 3e-32
Identities = 61/83 (73%), Positives = 65/83 (78%)
Frame = +3
Query: 159 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVXTVEYKNISFT 338
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNV TV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 339 VWDVGGQDKIXPLWRHYLQNTXG 407
VWDVGGQDKI PLWRHY T G
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKG 91
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 75.8 bits (178), Expect = 8e-15
Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 189 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVXTVEYKNISFTVWDVGGQDK 365
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 366 IXPLWRHYLQNT 401
+ W++Y ++T
Sbjct: 73 LRNFWKNYFEST 84
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 55.6 bits (128), Expect = 9e-09
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 192 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVXTVEYKNISFTVWDVGGQDKIX 371
K ++L +GLD AGKTT+L+ LK + PT+ + N+ FT +D+GG +
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 372 PLWRHYLQNTXG 407
LWR Y G
Sbjct: 79 RLWRDYFPEVNG 90
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +3
Query: 201 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVXTVEYKN----ISFTVWDVGGQDK 365
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 366 IXPLW-RHYLQNTXGSNLXXYTXTIGXVSATH 458
+ L +Y+Q G + T I + H
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPH 102
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 198 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVXTVEY--KNISFTVWDVGGQD 362
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 363 KIXPLWRHYLQNTXG 407
+ + Y + G
Sbjct: 70 RFRTITTAYYRGAMG 84
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +3
Query: 201 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVXT---VEYKNISFTVWDVGGQDK 365
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEE 68
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 33.1 bits (72), Expect = 0.057
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +3
Query: 198 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVX--TVEYKN--ISFTVWDVGGQ 359
+++ M+G + GKT+++ G + T+G N T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 33.1 bits (72), Expect = 0.057
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +3
Query: 201 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVXTVEY--KNISFTVWDVGGQDK 365
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 366 IXPLWRHYLQNTXG 407
+ Y + G
Sbjct: 70 FRTITSSYYRGAHG 83
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/78 (20%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 183 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVXT----VEYKNISFTVWD 347
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 348 VGGQDKIXPLWRHYLQNT 401
GQ++ L Y++++
Sbjct: 67 TAGQERFRSLIPSYIRDS 84
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = +3
Query: 201 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVXT----VEYKNISFTVWDVGGQDK 365
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 366 IXPLWRHYLQNTXGSNLXXYTXT 434
+ Y + G+ L Y T
Sbjct: 72 YRAITSAYYRGAVGA-LIVYDIT 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.23
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = +3
Query: 201 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVXT---VEYKNISFTVWDVGGQ--- 359
++++VG A GKT +L G +PT+ N V+ ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 360 DKIXPL 377
D++ PL
Sbjct: 68 DRLRPL 73
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 29.5 bits (63), Expect = 0.70
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 315 EYKNISFTVWDVGGQDKIXPLWRHYLQNTXGSNL 416
+ K I +WD GQ+K + R+Y + G+ L
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVL 91
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 29.1 bits (62), Expect = 0.92
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 201 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVXT---VEYKNISFTVWDVGGQDKI 368
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 369 XPL 377
L
Sbjct: 75 DQL 77
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -2
Query: 313 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 134
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 133 EYNF 122
+ F
Sbjct: 248 IHVF 251
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +3
Query: 186 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVXT----VEYKNISFTVW 344
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 345 DVGGQDKIXPL 377
D GQ++ L
Sbjct: 63 DTAGQERFQSL 73
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 189 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVXTVEY 320
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 186 GKKEMRILMVGLDAAGKTTILYKLKL 263
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 183 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVXTVEYKNISFTVWD 347
F K+ RIL VG L + + K GE+ +P +GF +++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 204 ILMVGLDAAGKTTILYKLKL 263
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 192 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 293
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 168 LFKGLFGKKEMRILMVGLDAAGKTTI 245
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 807 PXPPPNXXXPLXXXXXXPPTSXLPXXPXXPLPPPXP 914
P PPP P P P P PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,445
Number of Sequences: 5004
Number of extensions: 42023
Number of successful extensions: 165
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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