Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_P18
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 32 0.47
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 32 0.47
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.62
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.62
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.62
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.3
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 5.8
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 7.7
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRP 737
PP PP P P P PP P P RP
Sbjct: 73 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRP 102
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRP 737
PP PP P P P PP P P RP
Sbjct: 295 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRP 324
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRPARRXXPPXTXAGXXXLPP 791
PP PP P PP P A P R PP G PP
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRPARRXXPPXTXAGXXXLPP 791
PP PP P PP P A P R PP G PP
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRPARRXXPPXTXAGXXXLPP 791
PP PP P PP P A P R PP G PP
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRPARR---XXPPXTXAGXXXLPP 791
PP PP P P PP P P P R PP T PP
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPP 172
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSP------XAPXXRPARRXXPPXTXAGXXXLPP 791
PP PP P P P PP P AP P PP + LPP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPP 1391
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 661 PPXXPXXXAXPXXXPLXPPPPXXAGPXXAAXP 756
PP P P P PPPP A P P
Sbjct: 94 PPASPCCGPSPVPAPCCPPPPAPAAPCCPPPP 125
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +3
Query: 651 PXPPXPXPXXXCXXXPXPPXSPXAPXXRPARRXXPPXTXAGXXXLPP 791
P PP P P P PP P P P R PP G +PP
Sbjct: 297 PPPPPPPPGRT----PGPPGMPGMPPPPPPSRFGPP----GMGGMPP 335
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +3
Query: 651 PXPPXPXPXXXCXXXPXPPXSPXAPXXRPARRXXPPXTXAGXXXLPP 791
P PP P P P PP P P P R PP G +PP
Sbjct: 307 PPPPPPPPGRT----PGPPGMPGMPPPPPPSRFGPP----GMGGMPP 345
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRPARRXXPP 758
PP P P P P PP P P P PP
Sbjct: 41 PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 648 PPXPPXPXPXXXCXXXPXPPXSPXAPXXRPARRXXPPXTXAG 773
PP PP P P PP P P P + PP G
Sbjct: 67 PPPPPPPPPLISILQQAPPPPPPPPP---PTLKAPPPPPILG 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,444
Number of Sequences: 27780
Number of extensions: 270903
Number of successful extensions: 1295
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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