Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P18
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   2.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.9  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 594 VNYVSKL*ISNNXYYFXXPPXPPXP 668
           +NY+ ++ I    YY   PP P  P
Sbjct: 111 INYIEQIPIPVPVYYGNFPPRPMGP 135


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 594 VNYVSKL*ISNNXYYFXXPPXPPXP 668
           +NY+ ++ I    YY   PP P  P
Sbjct: 116 INYIEQIPIPVPVYYGNFPPRPMGP 140


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 594 VNYVSKL*ISNNXYYFXXPPXPPXP 668
           +NY+ ++ I    YY   PP P  P
Sbjct: 116 INYIEQIPIPVPVYYGNFPPRPMGP 140


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 594 VNYVSKL*ISNNXYYFXXPPXPPXP 668
           +NY+ ++ I    YY   PP P  P
Sbjct: 116 INYIEQIPIPVPVYYGNFPPRPMGP 140


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 225 EEFPPGLRSSADRAESQHQREDEAQNT 145
           +EFP    S  +R  S HQR   + NT
Sbjct: 102 KEFPNSSSSDDERPNSIHQRASFSLNT 128


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 386 IHN-YLQYCFKLNASLVLYHEVYFPKDF 306
           +HN +   CF  NA  V +HE+  P  +
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSIPNHY 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,853
Number of Sequences: 438
Number of extensions: 4242
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)