Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P17
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   176   3e-45
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   171   1e-43
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   6.6  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  176 bits (429), Expect = 3e-45
 Identities = 80/121 (66%), Positives = 98/121 (80%)
 Frame = +3

Query: 126 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 305
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 306 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 485
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 486 P 488
           P
Sbjct: 130 P 130



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 33/53 (62%), Positives = 35/53 (66%)
 Frame = +1

Query: 496 DHQPITEASYVNIPVIALCXTDSPLTFVDIAIPCXTXSSHSIGLMLAGLLARE 654
           D Q I EAS+VNIPVIALC TDS L  VD+AIP       SIGL    LLARE
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY-LLARE 184


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  171 bits (416), Expect = 1e-43
 Identities = 75/125 (60%), Positives = 99/125 (79%)
 Frame = +3

Query: 114 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 293
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 294 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 473
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 474 IVLDP 488
           +V DP
Sbjct: 125 VVTDP 129



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 34/53 (64%), Positives = 36/53 (67%)
 Frame = +1

Query: 496 DHQPITEASYVNIPVIALCXTDSPLTFVDIAIPCXTXSSHSIGLMLAGLLARE 654
           D Q I EAS+VNIPVIALC TDS L  VDIAIP       SIGL+   LLARE
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY-LLARE 183


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 825 PPPPXXXXPXXAPXXTXLXHTPPXLXATRXPPPP 926
           PPPP    P  AP    +    P +     PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 249 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 425
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 759 PXSGXFGGGG*EGXXGAXQHPSGGHGG 679
           P  G FGG G  G  G   H  GGHGG
Sbjct: 202 PGPGGFGGFGGFGGEG---HHHGGHGG 225


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 517 ASYVNIPVIALCXTDSPLTFVDIAIPCXTXSSHSIGLMLAGLLAREXXTXSW 672
           ++YV IPV   C  DS ++  +I + C   +   +       L  E  +  W
Sbjct: 518 STYVRIPVDKKCMEDSAISMKNILLDCGEGTLGRLSRQYGDNLKYEIASLRW 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,611
Number of Sequences: 5004
Number of extensions: 71200
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)