Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P13
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   2.0  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   3.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   3.4  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   7.9  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = +3

Query: 276 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 449
           G+    CL   GC G G  +L+ +  R    +   A     R +  +    E  E  G+ 
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351

Query: 450 LTVFETFLPLS--PVGLLLQQLP 512
                 +L LS  P  +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 290 SLPVWLWVCWPRKTHAIRTSTKDA 361
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 194 KAVLSTYVKRTCYFFENS 247
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = +1

Query: 409 KDNHVVANELKALAS----LYLKRSYHYLLSASYFNNYQTNREXFAKLFXEIIGRFVGEN 576
           +       E++ALA      Y +    YL  +SY++N  TN     KL  E+I       
Sbjct: 459 RQQRYTTEEMRALAKRFRETYPRYKNLYLKVSSYYDNNDTNNPNLNKLQDELISLHSQLK 518

Query: 577 HWSH 588
            W +
Sbjct: 519 SWKN 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,156
Number of Sequences: 5004
Number of extensions: 58289
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)