Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P08
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    30   0.48 
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    27   2.5  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   4.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.9  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   7.8  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    26   7.8  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.8  

>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 515 EDCVVIHRNDGLMNDDDCAKSFPIYMQEKHWASLEWNVNCDIPNTDYAYSDVLGRCYK-M 691
           +DC+ +H     + DD  +   PI+ + KH       +  D      A  D  GR Y   
Sbjct: 267 DDCICLHPTPSSIADDLGSLPHPIFRKTKHCGQQNIRIRSDNKILATAGWDGRGRVYSCQ 326

Query: 692 YLTPMTLVPKHT 727
            L P+ ++  H+
Sbjct: 327 TLAPLAVLKYHS 338


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -2

Query: 736 CTPCMLRNQGHRGQIHLVASAKYIAVXVVGVRNVTIHIPLERSPVFFLHINGERFRTVI 560
           C PC           +  + A +I V V  +  +     +   P FFL+ NGE+   ++
Sbjct: 30  CGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIV 88


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 650 DYAYSDVLGRCYKMYLT 700
           D+  S+++GRC+ MY+T
Sbjct: 420 DHPVSEIVGRCFVMYIT 436


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 497  WARPASICYTRPLWRHHQQFSKTPLAICDEI 405
            WAR  S+ ++ P   HH  FS  P  +  EI
Sbjct: 1025 WARNLSMHWSIPFPTHHNFFSIIPFILLTEI 1055


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 196 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 291
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -3

Query: 489 PGFHLLYTSIMETPSTVFEDSFGHLR*DPDTDPFEGL*RVPISGHSIEFKLVIRVKESSP 310
           PG+H L+ S+    S +  D +  L      +PF    R+ + G  + F   + + ++S 
Sbjct: 43  PGYHFLFFSLASPESNLNSDGYESLYSPKPNNPFSFKRRIWLHG-VLRFHRPLHLFQTSE 101

Query: 309 LH 304
            H
Sbjct: 102 CH 103


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 242 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 391
           +A+TK   +IRNG +     ++W+GL + TL  S  S +       H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,049
Number of Sequences: 5004
Number of extensions: 73593
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)