Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P08
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432...    30   2.0  
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    28   8.2  

>01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,
            4329925-4331469,4332220-4332429,4332563-4332713,
            4332791-4333031,4333898-4333956,4334379-4334653,
            4334813-4334955,4335034-4335088,4335181-4335258,
            4335351-4335478,4335533-4335575
          Length = 1173

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 345  IRCCDHLLEHVTTLRMDQYRDLIADGQRSLRKLL 446
            IRC  H   HV  L M   RD++  GQ +  KL+
Sbjct: 1079 IRCLSHPSAHVRALSMSVLRDILNSGQINSSKLI 1112


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 739 HCTPCMLRNQGHRGQIHLVASAKYIAVXVVGVRNVTIHIPL 617
           HC   +LRN G R +  L+ +A ++ V + G   + IH P+
Sbjct: 97  HCY-LLLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPM 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,510,407
Number of Sequences: 37544
Number of extensions: 441193
Number of successful extensions: 992
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)