Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_P06
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.23 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.69 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   4.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 630 PPXXPXERXXPAPPPXPHPXPXNPTXSLRPXP 725
           P   P     PAPPP P P P  P  S+   P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495



 Score = 29.1 bits (62), Expect = 0.92
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +3

Query: 591 TGPETPTXLTKDXPPXXPXERXXPAPPPXPHPXPXNPTXSLRPXPXXR 734
           + P  P  +    PP        PAPPP   P P N T S  P    R
Sbjct: 228 SAPPIPPSIPSSRPPERVPSLSAPAPPPI--PPPSNGTVSSPPNSPPR 273


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/63 (25%), Positives = 20/63 (31%)
 Frame = +3

Query: 588  VTGPETPTXLTKDXPPXXPXERXXPAPPPXPHPXPXNPTXSLRPXPXXRXXPXXFFXLSX 767
            V  P  P   +   P   P     P PPP   P    P+  + P P     P      + 
Sbjct: 1166 VAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225

Query: 768  XPP 776
             PP
Sbjct: 1226 LPP 1228



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
 Frame = +3

Query: 606  PTXLTKDXPPXX-PXERXXPAPPPXPHPXPXNPTXSLRPXPXXRXXPXXFFXLSXXPPXX 782
            P     + PP   P     P PPP   P    P+  L P P            S   P  
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249

Query: 783  STXRS 797
            ST RS
Sbjct: 1250 STPRS 1254


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +3

Query: 576 LAAHVTGPETPTXLTKDXPPXXPXERXXPAPPPXPHPXPXNPTXSL 713
           L +H TG  T    T   P   P E   PAP P     P     SL
Sbjct: 98  LKSHATGLSTQKTSTLARPIQKPIEATIPAPSPYLFSEPLPSISSL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,101
Number of Sequences: 5004
Number of extensions: 28124
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)