Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_P04
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.7
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 29 3.8
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.1
04_04_1125 + 31085106-31085714 29 6.7
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.7
03_01_0515 - 3864796-3865425 28 8.9
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -3
Query: 528 PPXXGGXXKXGXXXPPXPGTXXLKWGXGGXXXPXXXLXXGXXXPXPXXGXPGXPXXXGIX 349
PP PP P G G P P P G P P G
Sbjct: 321 PPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRG 380
Query: 348 GGXXPP 331
GG PP
Sbjct: 381 GGGPPP 386
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/63 (25%), Positives = 17/63 (26%)
Frame = +2
Query: 266 PGRGTPPXXGEXGPXXXXXPXXGGXXPPKXPXXXGXPGXPXXGXGXXXPXXSXXXGXXXP 445
P P P G PP P P P G G P + G P
Sbjct: 325 PAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGP 384
Query: 446 PXP 454
P P
Sbjct: 385 PPP 387
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +3
Query: 273 GXPPPXRVXGXXXXXXXPXXGDXPPXKXPXXGAXXGXPXXXGXXXPPXXAXXXGXXPPP 449
G PPP R G P PP + P A PP G PPP
Sbjct: 73 GPPPPQRPFGAGPPQQGPFAAAAPPPQGPFTSAPSSQGPFAAAPQPPSQG-PFGTAPPP 130
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.1
Identities = 25/97 (25%), Positives = 25/97 (25%)
Frame = +2
Query: 197 PGXPXKEKXPGKKXKXXKXXRGXPGRGTPPXXGEXGPXXXXXPXXGGXXPPKXPXXXGXP 376
P P E G G P PP G G G PP P G
Sbjct: 1137 PAPPLPEGIGGVPPPPPVGGLGGPP-APPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGV 1195
Query: 377 GXPXXGXGXXXPXXSXXXGXXXPPXPHFRXXVPGXGG 487
G P G P PP P R GG
Sbjct: 1196 GGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Frame = -3
Query: 528 PPXXGGXXKXGXXXPPXP-----GTXXLKWGXG-GXXXPXXXLXXGXXXPXPXXGXPGXP 367
PP GG G PP P GT G P G P G P P
Sbjct: 1151 PPPVGGLG--GPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPP 1208
Query: 366 XXXGIXGGXXPPXXG 322
G+ GG PP G
Sbjct: 1209 MPPGVPGGPPPPPGG 1223
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 755 PXGPPPPXXAPTXXTXXPRPXNPAXXKTXPGXXP 856
P P P PT T P P PA T P P
Sbjct: 70 PTPPTPTPWTPTPATPPPTPATPATPTTPPTPAP 103
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +3
Query: 267 PAGXPPPXRVXGXXXXXXXPXXGDXPPXKXPXXGAXXGXPXXXGXXXPPXXAXXXGXXPP 446
PA PPP P PP P G P PP G PP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPP-----PPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
Query: 447 PXPILGSXSRG 479
P P G G
Sbjct: 366 PPPPPGGKKGG 376
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/70 (28%), Positives = 20/70 (28%)
Frame = +3
Query: 267 PAGXPPPXRVXGXXXXXXXPXXGDXPPXKXPXXGAXXGXPXXXGXXXPPXXAXXXGXXPP 446
PA PP P G PP P G P PP PP
Sbjct: 321 PAAAAPPPPPPPKAAPPPPPPKGPPPPP--PAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Query: 447 PXPILGSXSR 476
P P G SR
Sbjct: 379 PPPPKGGASR 388
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 755 PXGPPPPXXAPTXXTXXPRPXNPAXXKTXPGXXP 856
P PPPP A + P P P+ K+ P P
Sbjct: 87 PLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,788
Number of Sequences: 37544
Number of extensions: 223307
Number of successful extensions: 946
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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