Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O22
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    27   2.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   7.6  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   7.6  

>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -1

Query: 758 RFGIKERRTPLRQSIXTKLSSV 693
           ++ IKE+RT LRQ++ TKL S+
Sbjct: 113 KWAIKEKRTFLRQALETKLISL 134


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 193 GALHHESCLTISSSRPCLRTSRRSPREYNIEKSCEKYMN 309
           G+L  +  L IS    CL     +PRE N+E S  K ++
Sbjct: 373 GSLKLQQELFISYLISCLHIPSTTPRERNVETSLHKVVS 411


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 314 MFVKQFMGDVLRWACSPRGETFVHTNELQWKES-----RQVFEVLYYAKDFDVFMRTAC 475
           M+  +    +L W+ S R E F H N  +  E      +++F ++ Y +D +  +  AC
Sbjct: 333 MYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNED-NTSLAVAC 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,849
Number of Sequences: 5004
Number of extensions: 67511
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)