Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O18
         (1206 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 700  PPPPPPXXXGG 668
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 699  PPPPPPXXXGG 667
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.0 bits (42), Expect(2) = 2.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 1008 PPPPPP 1025
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 1068 PXPPPPP 1088
            P PPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 640 SPPKKXXPPPPXXXGG 687
           +PPK   PPPP    G
Sbjct: 337 TPPKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 700 PPPPPPXXXG 671
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 699 PPPPPPXXXG 670
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,897
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41211342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)