Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O16
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   301   7e-84
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.1  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  301 bits (738), Expect = 7e-84
 Identities = 142/194 (73%), Positives = 157/194 (80%)
 Frame = +3

Query: 129 GGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 308
           GGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRLDTGNFSWGSEC+TR
Sbjct: 15  GGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTR 74

Query: 309 KTRIIDVVYNASNNELVRTKTLGQNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 488
           KTRIIDVVYNASNNELVRTKTL +NAIV +DATPFRQWYE HY LPLGRK+GAKLTEAEE
Sbjct: 75  KTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEE 134

Query: 489 AIINKKRSPKTARKYLGRATSC*G*GCSKXAXHTGAFAGLRGESPGQCGRADGYILKGKE 668
            ++NKKRS K   KY  R          +    TG         PGQCGR DGYIL+GKE
Sbjct: 135 EVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKE 194

Query: 669 LEFYLRKIKSKRAK 710
           LEFY+R+IKSK+AK
Sbjct: 195 LEFYMRRIKSKKAK 208



 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 86  MGISRDHWHKRRATG 130
           MGISRDHWHKRRATG
Sbjct: 1   MGISRDHWHKRRATG 15


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 428 LIPLPEWSCIYYNNC 384
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 428 LIPLPEWSCIYYNNC 384
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 428 LIPLPEWSCIYYNNC 384
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,995
Number of Sequences: 438
Number of extensions: 4748
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)