Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O15
         (924 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.97 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +3

Query: 699 PXXPPPPXPXH-PPPXPPPXAP 761
           P    PP P   PPP  PP AP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
 Frame = +2

Query: 845 PPPXPXPQRXP-----XXPPHPSXXXPPLPP 922
           P P P P + P       PP+PS   PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +3

Query: 858 PXXNAXPXPPHTPPXXXPPSPP 923
           P   + P P   PP   PP  P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 827 PGAXXPPPPXPXPQRXPXXPPHPS 898
           P A  P PP P        PP P+
Sbjct: 411 PSAGAPMPPIPNMSNMSGMPPLPN 434


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 649 EXXRGGGRGXGRGXXXXXRGGXGGXG 572
           E  RG GRG G+G      G  G  G
Sbjct: 77  ETGRGKGRGHGKGGSRGRGGNRGRTG 102


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 714 PPXPXHPPPXPPPXAP 761
           PP P  PPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 708 PPPPXPXHPPP 740
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 760 GAXGGGXGGGWXGXGGGGXXGXXXG 686
           GA GG    G    GGGG  G   G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 821  PXPGAXXPPPPXP 859
            P  G+  PPPP P
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,009
Number of Sequences: 438
Number of extensions: 6817
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)