Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O08
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.7  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 579 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTPASRSL 683
           T ++STG  T  + + T S   P+  TSTP + S+
Sbjct: 754 TTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSI 788


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 408 TPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFR 229
           TPS +    +  P  +S     L  ++  E ++S   SL S+DP+  STF SL    T  
Sbjct: 129 TPSSTESSSLLDPSSVSSA--ILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSS 184

Query: 228 AAPEVPS 208
           + P V S
Sbjct: 185 SQPSVSS 191


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 579 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTPAS 674
           T++SST +T+ P  +  C+    V  TSTP +
Sbjct: 515 TISSSTPVTSTPVTTTNCTTSTSVLYTSTPVT 546



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 579 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTP 668
           T++SST +T+ P  +  C+    V  TSTP
Sbjct: 574 TISSSTPVTSTPVTTTNCTTSTSVLYTSTP 603


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 405 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 295
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 579 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTPASRSLI 686
           T++SS+ +   P+V+ + S    + + STPA+ ++I
Sbjct: 310 TISSSSFIVESPSVALSTSSTTTITNASTPAANTII 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,463
Number of Sequences: 5004
Number of extensions: 54831
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)