Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_O06
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.60
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.79
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 7.4
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 26 7.4
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 7.4
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 9.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.7
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 9.7
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 573 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 472
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 217 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 360
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 184 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 300
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/89 (26%), Positives = 43/89 (48%)
Frame = -1
Query: 287 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 108
F S ++ F R+S + S TT+ + S SVL ++ A+E S TA ++
Sbjct: 3567 FVPSSVSRSFSYSRFSSGSLDSSSVFNSTTVSTASGISQGSVLSSTRAIE-SESTASHRS 3625
Query: 107 NKVSLILAQWLSLKASQQTTSKS*GIPYS 21
+ +S + + LS A ++S+ + YS
Sbjct: 3626 SVLSELSSYDLSTSAFSSSSSEPSTLDYS 3654
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 421 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 513
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/82 (19%), Positives = 35/82 (42%)
Frame = -3
Query: 270 NLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEGKQSQSH 91
N+S FL +R + + DDT + ++R SS C+ + TH ++
Sbjct: 28 NISKTFLS-YRTLTALAIETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGG 86
Query: 90 LGAVVIFESKSTNNXKILRNSL 25
+ ++ N K+++ ++
Sbjct: 87 IHPTIVIHEHQKNLAKVIQRTI 108
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -1
Query: 320 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 141
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 140 EASAHTARTKA 108
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 9.7
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -1
Query: 278 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 117
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 116 TKANKVSLI 90
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +1
Query: 403 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 582
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 583 EDKQYLK 603
+ ++K
Sbjct: 202 DGFDFIK 208
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 471 VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 355
V+L+ + G + + L LL +D +++ +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 498 QRQNQQESLLEVYPRVGKQQSLLQDHVHRGQTVPEAR 608
+RQN Q+ L EV V + QSL+ + + V E R
Sbjct: 148 ERQNHQQQLEEVLATVDQLQSLVTNFNDQQDEVDELR 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,959
Number of Sequences: 5004
Number of extensions: 68479
Number of successful extensions: 247
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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