Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_O06
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.1
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.3
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 29 3.3
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 4.4
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 4.4
08_01_0100 - 714244-715461 29 5.8
05_03_0469 + 14439472-14440905 29 5.8
05_03_0618 - 16262826-16263097,16263111-16263183 28 7.7
03_02_0950 + 12661008-12662312,12662403-12662576 28 7.7
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 7.7
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 397 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 501
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 465 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 379
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -1
Query: 200 TLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQWLSLKASQQTTSKS*GIPYS 21
T +++C AS ++V G + AR L LA+ + ++Q GIP
Sbjct: 28 TPVFACDASNATVSGYGFCDRTKSSAARAADLLGRLTLAEKVGFLVNKQAALPRLGIPAY 87
Query: 20 EW 15
EW
Sbjct: 88 EW 89
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 184 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 354
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 355 KEIVK 369
+ +
Sbjct: 551 DPMTR 555
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = -3
Query: 333 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 187
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 186 LLRQYVISSWCKCGVRSQRTHGEDEGK 106
L + + C+ V S R HG +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>08_01_0100 - 714244-715461
Length = 405
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 658 RLTPSNTTGYLEPLPCSKSXXHVPSSTT 741
R P + GY++P P +KS +P TT
Sbjct: 181 RCRPRSPAGYVQPSPLTKSLWAIPPDTT 208
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 491 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPP 583
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 165 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 79
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 169 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 270
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 481 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 615
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,583
Number of Sequences: 37544
Number of extensions: 465308
Number of successful extensions: 1415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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