Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O05
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    30   0.39 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   4.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.9  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   8.5  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   8.5  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 172 PTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLP 327
           PT ET T  +    T   + +TTT+      + T +  T T P  + T+ LP
Sbjct: 102 PTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILP 153



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 169 TPTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLP 327
           TP +ET T L   A T+ +   TTT     T    TV  T T P  +  + LP
Sbjct: 143 TPMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVE-TMTTPMVEAMTILP 194



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 169 TPTQETATNLLTTARTSLILPK---TTTLMETATNLSTTVHITWTVPKADLTSSLP 327
           TP +ET T +     T+ ILP    TT ++ET T    TV  T T P  + T+  P
Sbjct: 68  TPMEETTT-ITPMVETTTILPMAAMTTPMVETTT--IPTVETT-TTPMVETTTITP 119


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 169 TPTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPPFP 336
           T T  T TN      TS     +T++  T  + S +  IT TVP    +S+  P P
Sbjct: 153 TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIP 208



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +1

Query: 169 TPTQETATNLLTTARTSLILPKTTTLMETATNL-------STTVHITWTVPKADLTSSLP 327
           T +  + ++  TT  +S  LP T+T   T+T++       S +  IT TVP    +S+  
Sbjct: 89  TESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSI 148

Query: 328 PFP 336
           P P
Sbjct: 149 PIP 151



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 169 TPTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPPFP 336
           T T  T TN      TS     T+T + T  + S +  IT TVP    +S+  P P
Sbjct: 210 TSTSSTDTNSSPLPTTSTSCT-TSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIP 264



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 190 TNLLTTARTSLILPKTTTLMETATNL----STTVHITWTVPKADLT-SSLPPFPGA 342
           T+  +T   S  LP T+T   T+T++    ++T  +T TVP    + +S PP P +
Sbjct: 266 TSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = +3

Query: 234 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYF 317
           DYN N  N Y PI N  Y+++   G    PYF
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYF 150


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = +1

Query: 163 WKTPTQETATNLLTTARTSLILP-------KTTTLMETATNLSTTVHITWTVPKADLTSS 321
           + + + ET+T+ +T+   + I+P        TTT +   T+++TT  +  T      T++
Sbjct: 49  FSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTT 108

Query: 322 LPP 330
            PP
Sbjct: 109 APP 111


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 193 NLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPPFPGARG 348
           NLL       +    TT +  +TN      +   +P A++ S+ PP    RG
Sbjct: 159 NLLLQPSYIPMTQTATTAVNNSTNYVNPAPLQHVMPNAEIFSNTPPLKRFRG 210


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 231 KDYNPNGNGYEPIDNGAYYVDRPQGRP 311
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,271
Number of Sequences: 5004
Number of extensions: 52463
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)