Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O04
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    69   6e-13
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   7.8  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
 Frame = +3

Query: 306 YGASRE-RNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILR 482
           Y A R  R     + F++  DLS L++WN K + +YL A Y T  +E NQVV+WDKI+  
Sbjct: 58  YHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSS 117

Query: 483 GENAVLDFKNMNTK---YYFWDDGNGLKGHSXVTLTLSWNIIPNAGLLPNIXASWSTLPS 653
            E + +  K+  +    + F +  N  +G +  T TL W + P  G L     SW   P 
Sbjct: 118 PEESKMFMKDTLSNIQAHPFNEYSNQFEGKN-ATYTLHWTVSPKMGFL-----SWGAGPG 171

Query: 654 KFPIXY 671
            + I +
Sbjct: 172 SYEIPF 177


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 310 EHLGNEMILAS*LSILKQICPISLTGTLNSCSYISLPNTLHQ 435
           E LGN+ I A+   ++K++C  S   T N C  +S  + + Q
Sbjct: 171 EKLGNKSIEANRSPLIKELCE-SANSTENVCFSVSTVDEIQQ 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,892
Number of Sequences: 5004
Number of extensions: 57651
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)