Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O03
         (1015 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    34   0.037
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    34   0.037
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   7.4  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = +2

Query: 449 KXXKIXXQXXVQXKXPQIXVVPSXXALXXQSP*GASPXNRXXXXXXXXNGNISLEXCIRX 628
           K  ++  +  +Q +   + VVPS  AL  ++       +R        +GN+SL+  I  
Sbjct: 54  KGLRVTVKLTIQNRQAAVSVVPSASALVIKAL-KEPARDRKKDKNVAHSGNVSLDEIIEV 112

Query: 629 GKN-HXKQINGPVTFPGSVKXXSWPSTVSLDVLVEGRPPHDLIDDINSGALTIDE 790
            +    K +   ++  G+VK     +  S+   V+G+ PHD+  +I++G + I +
Sbjct: 113 ARTMRFKSLAKELS--GTVKEILG-TAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = +2

Query: 449 KXXKIXXQXXVQXKXPQIXVVPSXXALXXQSP*GASPXNRXXXXXXXXNGNISLEXCIRX 628
           K  ++  +  +Q +   + VVPS  AL  ++       +R        +GN+SL+  I  
Sbjct: 54  KGLRVTVKLTIQNRQAAVSVVPSASALVIKAL-KEPARDRKKDKNVAHSGNVSLDEIIEV 112

Query: 629 GKN-HXKQINGPVTFPGSVKXXSWPSTVSLDVLVEGRPPHDLIDDINSGALTIDE 790
            +    K +   ++  G+VK     +  S+   V+G+ PHD+  +I++G + I +
Sbjct: 113 ARTMRFKSLAKELS--GTVKEILG-TAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 649 DQWPGYLSWLSKXXFLAQ-HSQF 714
           +QWP Y+S+L+K   + Q HS F
Sbjct: 31  EQWPDYISFLTKLHKVLQTHSSF 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,348
Number of Sequences: 5004
Number of extensions: 38724
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)