Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_O03
         (1015 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...    36   0.061
U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.           28   9.2  
U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog (hedgeh...    28   9.2  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score = 35.5 bits (78), Expect = 0.061
 Identities = 26/112 (23%), Positives = 52/112 (46%)
 Frame = +2

Query: 449 KXXKIXXQXXVQXKXPQIXVVPSXXALXXQSP*GASPXNRXXXXXXXXNGNISLEXCIRX 628
           K  K+  +  +Q +  +I VVPS  +L  +      P +R        NG+++++  I+ 
Sbjct: 54  KGLKVTCKLTIQNRVAKIDVVPSAASLIVKEL-KEPPRDRKKVKNVKHNGDLTVDTIIKI 112

Query: 629 GKNHXKQINGPVTFPGSVKXXSWPSTVSLDVLVEGRPPHDLIDDINSGALTI 784
            +    +        G+VK     +  S+   ++G+ PHD+I+ I +G + I
Sbjct: 113 ARIMRPRSMAK-KLEGTVKEILGTAQ-SVGCTIDGQHPHDIIESIANGEIEI 162


>U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 593 NGNISLEXCIRXGKNHXKQINGPVTFPGSV 682
           NG++SL+ C   G    +++  PV  PG V
Sbjct: 123 NGDLSLQCCHYEGLRFAQEVGRPVVHPGEV 152


>U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 1 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 593 NGNISLEXCIRXGKNHXKQINGPVTFPGSV 682
           NG++SL+ C   G    +++  PV  PG V
Sbjct: 122 NGDLSLQCCHYEGLRFAQEVGRPVVHPGEV 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,623
Number of Sequences: 27780
Number of extensions: 241902
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2667870690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)