Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N24
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.30 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   2.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   8.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 773  PPPVXPLPPPXXGXSXPRXPPASPP 847
            PPP   +PPP      P  PP++PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 764 AXXPPPVXPLPPPXXGXSXPRXPPASPP 847
           A  PP   P PPP  G   P  PP  PP
Sbjct: 2   ASLPPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 22/51 (43%), Positives = 22/51 (43%)
 Frame = -2

Query: 927 GGXXGVGTGGGXXEXGEVXRGXGXXRXGGEAGGXRGXDXPXXGGGRGXTGG 775
           GG  G G GG     G    G G  R GG  GG RG      GG RG  GG
Sbjct: 12  GGSRG-GRGGFNGGRGGFGGGRGGARGGGR-GGARGGRG-GRGGARGGRGG 59



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = -2

Query: 909 GTGGGXXEXGEVXRGXGXXRXGGEAGGXRGXDXPXXGGGRGXTGG 775
           G GG     G    G G    GG  GG RG       GGRG  GG
Sbjct: 10  GRGGSRGGRGGFNGGRGGF--GGGRGGARGGGRGGARGGRGGRGG 52


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/51 (39%), Positives = 20/51 (39%)
 Frame = -2

Query: 924 GXXGVGTGGGXXEXGEVXRGXGXXRXGGEAGGXRGXDXPXXGGGRGXTGGG 772
           G  G G  GG    G    G G    GG  GG  G      GGG G  GGG
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGF--GGGPGGFEGGPG-GFGGGPGGFGGG 250


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 737 PFSSASRXXAXXPPPVXPLPPPXXGXSXPRXPPASPP 847
           P  +ASR      PPV P PP     + P  PP++PP
Sbjct: 405 PLGNASRTST---PPV-PTPPSLPPSAPPSLPPSAPP 437



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 773 PPPVXPLPPPXXGXSXPRXPPASPP 847
           PP   P  PP    S P   PA+PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPP 448



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +2

Query: 776 PPVXPLPPPXXGX--SXPRXPPASPPXRXXPXP 868
           PP  P+ PP      + P  PPA+P     P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 773 PPPVXPLPPPXXGXSXPRXPPASPP 847
           PPP  P PPP    + P  PP  PP
Sbjct: 761 PPP--PPPPPGVAGAGPPPPPPPPP 783


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = -2

Query: 882 GEVXRGXGXXRXGGEAGGXRGXDXPXXGGG-RGXTGGGXXAXXR 754
           G   RG      GG  GG  G      GGG RG  GGG     R
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSR 179


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 743 SSASRXXAXXPPPVXPLPPPXXGXSXPRXPPASPP 847
           S A    +  PPP  P  P     S P  P A PP
Sbjct: 162 SKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 743 SSASRXXAXXPPPVXPLPPPXXGXSXPRXPPASP--PXRXXPXP 868
           +SA    +  PP    LPPP    +  + PP++P  P    P P
Sbjct: 155 ASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 743 SSASRXXAXXPP-PVXPLPPPXXGXSXPRXPPASP 844
           +SA+   A  PP P   L PP      P  PP SP
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSP 154


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
 Frame = +2

Query: 737  PFSSASRXXAXXPPP---VXPLPPPXXGXSXPRX----PPASPPXRXXPXP 868
            P  + S      P P   V P+PPP      P+     PP  PP    P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 846 GGEAGGXRGXDXPXXGGGRGXTGGG 772
           GG  GG  G       GGRG  GGG
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGG 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,410
Number of Sequences: 5004
Number of extensions: 43509
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)