Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N22
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.014
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   0.11 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   2.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +2

Query: 767 PPPXAPP--RXQXPPWXXKXXARGNXPHAXPGPASXXPXXXXHPPXXXTPPPPPP 925
           PPP  PP  R +  P      +  + P   P P S        PP   + PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 24/108 (22%), Positives = 27/108 (25%), Gaps = 3/108 (2%)
 Frame = +2

Query: 611 PXPPPPXXXXNPNXDPPP---SKXVXNXXXXXXXXXXXXXXXXXXXXXXXXPXXXPPPXA 781
           P PPPP    +    PPP   S+ V N                            P P  
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420

Query: 782 PPRXQXPPWXXKXXARGNXPHAXPGPASXXPXXXXHPPXXXTPPPPPP 925
           P      P      A  + P   P      P     PP     P  PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect(2) = 0.11
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 663 GGGSXLGFXXXXGGGGXGLXGRVXGGGGXPXGW 565
           G G   G     GGG  G  G + G GG P G+
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF 261



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -3

Query: 660 GGSXLGFXXXXGG--GGXGLXGRVXGGGGXPXGW 565
           GG   GF    GG  GG G  G   GG G P GW
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP-GW 273



 Score = 24.2 bits (50), Expect(2) = 0.11
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = -3

Query: 924 GGGGGGVXXXGGWXXXXGXXXAGPGWAXGXXPRAXXFXXQGGXCXRGGAXGG 769
           G  GGG    GG+    G    GPG   G           GG    GG  GG
Sbjct: 184 GHNGGGF---GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = +2

Query: 755 PXXXPPPXAPPRXQXPPWXXKXXARGNXPHAXPGPASXXPXXXXHPPXXXTPPPP 919
           P   P P  P     PP       R + P   P PAS  P     PP   + PPP
Sbjct: 124 PPSAPAPPTPQSELRPP--TSAPPRPSIP--PPSPASAPPIPSKAPPIPSSLPPP 174



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
 Frame = +2

Query: 428 PXXGXPPPXXGTGXAGXXGPTQXXIPHPXDGGXPGXPKKAXXXXA-----XQPCGXXXXX 592
           P    PP            P +  IP P     P  P KA    +      QP       
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 593 XTRPXXPXPPPPXXXXNPNXDPPP 664
            + P  P   PP     P   PPP
Sbjct: 185 PSAPSLPSAVPPMP---PKVPPPP 205


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -3

Query: 924 GGGGGGVXXXGGWXXXXGXXXAGPGWAXGXXPRAXXFXXQGGXCXRGGAXGG 769
           GG GG     GG+    G    G G A G          +GG   RGGA GG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARG----GGRGGARGGRGGRGGARGG 56


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 602 PXXPXPPPPXXXXNPNXDPPP 664
           P  P PPPP     P   PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 611 PXPPPPXXXXNPNXDPPP 664
           P PPPP     P+  PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 767  PPPXAPPRXQXPP 805
            PPP APP    PP
Sbjct: 1716 PPPSAPPMPAGPP 1728



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 611  PXPPPPXXXXNPNXDPPP 664
            P PPPP     P    PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 851 PGPASXXPXXXXHPPXXXTPPPPPP 925
           P  A+  P    HP    TPPPPPP
Sbjct: 892 PNDATSLPTIITHP----TPPPPPP 912


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
 Frame = +2

Query: 770 PPXAPPRXQXPPWXXKXXARGNXPHAXPGPASXXPXXXXHPPXXXT--PPPPPP 925
           PP  PP    P       A    P   P P    P     PP      PPPPPP
Sbjct: 732 PPPPPPAVIVPT-----PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +1

Query: 766 PPPXGPPPXTXXPLXTKXXRPRXXPXRPXGARXXXXPXXXPPXRXXDPPPPXT 924
           P P  PPP T  P  T   +    P R             PP     PP P T
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQ-LPMPSRNVNNLGSQVNIPPPPATPSQPPRPPT 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,759
Number of Sequences: 5004
Number of extensions: 18414
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)