Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N21
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.5  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    26   6.1  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 347 SRGALGDANGKAKGGFGTVEAEHRAHGRGAPQG 445
           SRG  G  NG  +GGFG      R  GRG  +G
Sbjct: 14  SRGGRGGFNG-GRGGFGGGRGGARGGGRGGARG 45


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +2

Query: 14  THYREFLRFDTLLCV-AVRFASPPHSVSRQYIMAAKF---VVLFACIALAQGSDGATRRS 181
           T Y ++  +  LL V +   A P   +++  I+   F   V +   IALA GSD  TR S
Sbjct: 170 TKYEQYGIYAALLFVISAMTAIPSRVIAKVNIINITFQFLVSIILIIALAAGSDSTTRNS 229

Query: 182 -RLLQGHRTPHQGSS 223
              + G  T + G S
Sbjct: 230 GSFIFGDFTNYSGWS 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,900
Number of Sequences: 5004
Number of extensions: 38486
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)