Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N21
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   5.7  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    29   5.7  
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    28   7.6  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    28   7.6  

>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 416 DVLPRLFQSLPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDLVSELNC 240
           +V P+ ++   W   + +       L K  S   T  E  F+AL+  CA   L+ EL C
Sbjct: 92  NVAPQFYKGTGWASHAGIAVRVLSNLYKGYSNFHTVQEKIFKALVDMCAEARLIGELEC 150


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 440 AELLGRALDVLPRLFQSLPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSC 273
           AEL  +AL+ L  L QS+P  C      L    +   L     D+ PS  +   SC
Sbjct: 161 AELCVQALESLLSLIQSMPIDCLQSENRLSMSAMMHVLKTLREDACPSVSSKATSC 216


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 440 AELLGRALDVLPRLFQSLPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSC 273
           AEL  +AL+ L  L QS+P  C      L    +   L     D+ PS  +   SC
Sbjct: 161 AELCVQALESLLSLIQSMPIDCLQSENRLSMSAMMHVLKTLREDACPSVSSKATSC 216


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 270 RTGLQQGLEGRLRVRAATAQRLRQESPGERSETRTARPREALE--QSRQN 413
           R  +  G E RLR++   A R R E+PG  +   T +  E +E    RQN
Sbjct: 560 RKSIAVGGENRLRLKTFIAGRNRLENPGAHALAATFKALETVEWFDVRQN 609


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           a protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 270 RTGLQQGLEGRLRVRAATAQRLRQESPGERSETRTARPREALE--QSRQN 413
           R  +  G E RLR++   A R R E+PG  +   T +  E +E    RQN
Sbjct: 597 RKSIAVGGENRLRLKTFIAGRNRLENPGAHALAATFKALETVEWFDVRQN 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,216
Number of Sequences: 27780
Number of extensions: 227936
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)