Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_N20
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 336 2e-93
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 336 3e-93
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 336 3e-93
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 175 5e-45
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 172 6e-44
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 99 7e-22
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 6e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.013
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.017
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 32 0.090
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 32 0.090
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.36
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.63
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.63
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.63
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 28 1.9
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.6
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa... 26 5.9
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 7.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 336 bits (826), Expect = 2e-93
Identities = 160/226 (70%), Positives = 184/226 (81%), Gaps = 2/226 (0%)
Frame = +3
Query: 180 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERERGITIDIALWKFETSK 359
GHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL+AERERGITIDIALWKFET K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 539
Y VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLG
Sbjct: 85 YNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Query: 540 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIXKIGYXPAAVAFVPISGWHGDXMLEP 719
VKQLIV VNKMD+T +S+ RFEEI KE S++I K+G+ P V FVP+SG+ GD M+EP
Sbjct: 145 VKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEP 202
Query: 720 STKMPWFKGWXGGXVRXAKLTGKCLIEXLXC--HPGQPGPXPLTKP 851
+T MPW++GW + + GK L+E + P +P PL P
Sbjct: 203 TTNMPWYQGWQ-KETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
Score = 54.0 bits (124), Expect = 3e-08
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGSL 187
MGKEK HIN+VVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 336 bits (825), Expect = 3e-93
Identities = 159/226 (70%), Positives = 184/226 (81%), Gaps = 2/226 (0%)
Frame = +3
Query: 180 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERERGITIDIALWKFETSK 359
GHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL+AERERGITIDIALWKFET K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 539
Y VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLG
Sbjct: 85 YNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Query: 540 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIXKIGYXPAAVAFVPISGWHGDXMLEP 719
VKQLIV VNKMD+T +S+ RFEEI KE S++I K+G+ P V FVP+SG+ GD M+EP
Sbjct: 145 VKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEP 202
Query: 720 STKMPWFKGWXGGXVRXAKLTGKCLIEXLXC--HPGQPGPXPLTKP 851
+T MPW++GW + + GK L+E + P +P PL P
Sbjct: 203 TTNMPWYQGWQ-KETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
Score = 54.0 bits (124), Expect = 3e-08
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGSL 187
MGKEK HIN+VVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 336 bits (825), Expect = 3e-93
Identities = 159/226 (70%), Positives = 184/226 (81%), Gaps = 2/226 (0%)
Frame = +3
Query: 180 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERERGITIDIALWKFETSK 359
GHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL+AERERGITIDIALWKFET K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 539
Y VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLG
Sbjct: 85 YNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Query: 540 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIXKIGYXPAAVAFVPISGWHGDXMLEP 719
VKQLIV VNKMD+T +S+ RFEEI KE S++I K+G+ P V FVP+SG+ GD M+EP
Sbjct: 145 VKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEP 202
Query: 720 STKMPWFKGWXGGXVRXAKLTGKCLIEXLXC--HPGQPGPXPLTKP 851
+T MPW++GW + + GK L+E + P +P PL P
Sbjct: 203 TTNMPWYQGWQ-KETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
Score = 54.0 bits (124), Expect = 3e-08
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGSL 187
MGKEK HIN+VVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 175 bits (427), Expect = 5e-45
Identities = 88/192 (45%), Positives = 121/192 (63%), Gaps = 3/192 (1%)
Frame = +3
Query: 180 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERERGITIDIALWKFETSK 359
G ++++ G I+ R+++K EA GKGSF YAW+LD + ER RG+T+D+A FE+ K
Sbjct: 195 GRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 539
I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG
Sbjct: 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALG 314
Query: 540 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIXK-IGYXPAAVAFVPISGWHGDXML- 713
+ +++V VNK+D +SE RF+EIK VS ++ K +G+ + V FVPIS G ++
Sbjct: 315 ISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
Query: 714 -EPSTKMPWFKG 746
+ S W+KG
Sbjct: 373 KDSSDLYKWYKG 384
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGSLDLQM 199
K +++VV GHVDSGKST G + ++
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFEL 201
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 172 bits (418), Expect = 6e-44
Identities = 80/193 (41%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Frame = +3
Query: 180 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLQAERERGITIDIALWKFETSK 359
G++++ G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T+++ FET
Sbjct: 256 GNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 315
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 539
+++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G
Sbjct: 316 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG 375
Query: 540 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIXKI-GYXPAA-VAFVPISGWHGDXML 713
+ L+V +NKMD +SE R++E ++S ++ ++ GY V ++P+S + G +
Sbjct: 376 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVK 435
Query: 714 E--PSTKMPWFKG 746
+ S+ PW++G
Sbjct: 436 DRVDSSVCPWYQG 448
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 119 KTHINIVVIGHVDSGKSTTTGSL 187
K H+NIV IGHVD+GKST G++
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNI 258
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 99.1 bits (236), Expect = 7e-22
Identities = 53/130 (40%), Positives = 79/130 (60%)
Frame = +3
Query: 249 EMGKGSFKYAWVLDKLQAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 428
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 429 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 608
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVE 191
Query: 609 EEIKKEVSSY 638
E+++ +S Y
Sbjct: 192 MEMRELLSEY 201
Score = 34.7 bits (76), Expect = 0.017
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 113 KEKTHINIVVIGHVDSGKSTTTGSL 187
++K H+NI IGHVD GK+T T ++
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTAAI 73
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 6e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +3
Query: 282 VLDKLQAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 461
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 462 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 575
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 285 LDKLQAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 452
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 453 VAAGTG 470
V A G
Sbjct: 155 VDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +3
Query: 363 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 542
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 543 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 641
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.013
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 255 GKGSFKYAWVLDKLQAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 428
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 429 QADCAVLIVAAGTG 470
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.7 bits (76), Expect = 0.017
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Frame = +3
Query: 285 LDKLQAERERGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIK 407
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 408 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 515
+ D AVL++ A +G I+ + Q R +
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 32.3 bits (70), Expect = 0.090
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGSL 187
MGK N+ VI HVD GKST T SL
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSL 39
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 455
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 32.3 bits (70), Expect = 0.090
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 107 MGKEKTHINIVVIGHVDSGKSTTTGSL 187
MGK N+ VI HVD GKST T SL
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSL 39
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 455
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 470
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.63
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 325 IVIPRSRSACSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 197
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 288 DKLQAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 410
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.63
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 372 IIDAPGHRDFIKNMITGTSQADCAVLIV 455
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 115 LAHFWLVTGLQTACNIRDRLQQESNLKEF 29
L H+ L TGL + C++ LQ +N ++F
Sbjct: 290 LTHYDLETGLSSTCDVNCSLQNFANYQDF 318
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 303 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 455
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPACUNK4.17 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 671 RFRAHFWMARRXHVGAFNQNALVQGMXRWXRKEXQAD 781
RF A W + VGAF N +QG E QAD
Sbjct: 292 RFTAASWKYKDGGVGAFTHNITLQGAKYDTCIEVQAD 328
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/43 (27%), Positives = 16/43 (37%)
Frame = +3
Query: 693 WHGDXMLEPSTKMPWFKGWXGGXVRXAKLTGKCLIEXLXCHPG 821
W EPS PW KG G + + + L + H G
Sbjct: 325 WKASKPGEPSWDSPWSKGRPGWHIECSVMASALLGSNIDIHSG 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,294
Number of Sequences: 5004
Number of extensions: 66028
Number of successful extensions: 228
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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