Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N17
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   5.0  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   8.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.7  

>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 25/109 (22%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
 Frame = +2

Query: 350 AGAKLRAGFRLAPVACXPAKTSPATTSPSFTGXIGSGPXSSCAF-QTPQHANXSXAVRAR 526
           A A+ R G    P     +  S    +  +T  IGS    S  +     H N +  V   
Sbjct: 46  AEARARPGATAVPRRSPTSPQSAYVPATVYTSPIGSPRRGSVRYTHVMAHPNTTTTVSEN 105

Query: 527 LHGRRRQXPTHXXXXXXXXXLPXPXPXXXVTGGXXHRNPXPPPPHXXPP 673
           L     + P            P        T    H  P  PPP   PP
Sbjct: 106 LP---EEVPPPYSPAATASNTPQNEASPAATEAVNHERPASPPPVYRPP 151


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 377 RLAPVACXPAKTSPATTSPSFTGXIGSGPXSSCAFQTP 490
           +++P+   P KT P  +SPS T  I S P ++    TP
Sbjct: 686 KISPIRASPVKTIP--SSPSPTTNIFSAPLNNITNCTP 721


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
 Frame = +3

Query: 654  PPTXXPXXXPXRXPPG--APXGPWXXXXPXXPXPGLFXPPXXXGAAXPXPP 800
            PP   P   P    P   AP  P     P  P P +  PP    +  P  P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,339
Number of Sequences: 5004
Number of extensions: 26153
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)