Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N13
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.49 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.64 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.85 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   2.6  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.0  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    26   7.9  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +3

Query: 750 LXSPPXXPXXPXPPXPXXXPXPXXPPXXRXXRXPPXP 860
           L SPP  P     P P   P P  PP       PP P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 758 PPXXPXXPPPPXPXXXPXXXXPPXXEGXPGPPP 856
           PP      P P P   P     P   G P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 758 PPXXPXXPPPPXPXXXPXXXXPPXXEGXPGPPP 856
           P   P  PP P     P    PP   G   PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 NDCFTDEECLLSVNSLRQHHMLLAGFKDLGYSFV 360
           N  FTDE+  + V  LRQ +++L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 758  PPXXPXXPPPPXPXXXPXXXXPPXXEGXPGPPP 856
            P      PPPP     P    PP   G P  PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 758 PPXXPXXPPPPXPXXXPXXXXPPXXEG 838
           PP  P  PPPP     P    PP   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 770 PXXPPPPXPXXXPXXXXPPXXEGXPGPPP 856
           P  PPPP P   P    PP  +  P PPP
Sbjct: 6   PGNPPPPPP---PPGFEPPS-QPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 770 PXXPPPPXPXXXPXXXXPPXXEGXPGPPP 856
           P  PPPP          PP     P PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +2

Query: 758 PPXXPXXP-PPPXPXXXPXXXXPPXXEGXPGPPP 856
           PP  P  P  PP P   P    PP     P PPP
Sbjct: 447 PPLPPSAPIAPPLPAGMPAA--PPLPPAAPAPPP 478



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +2

Query: 758 PPXXPXXPPPPXPXXXPXXXXPPXXEGXPGPPP 856
           PP  P   P   P        PP   G P  PP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 171 WEFRRIRTLHSGFRNSPRTPKNNRDGATNIFATCFRFVECKSK 43
           W+ RR   +H+    +  TP  +++   NIF  C +F    SK
Sbjct: 337 WQHRRDYIVHNNRERNTITPLLSQNDLWNIFFLCTKFWSLHSK 379


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 170 GNFAAFGRCIQGSETHQEHQKIIETVQPT 84
           GN   FG+C+Q +ET     KI  T++ T
Sbjct: 314 GNLGEFGKCLQKNETLLAKTKIYLTLEGT 342


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 410 PIWFHPAPS*IFPLPPATNE*PKSLNPARS 321
           P +  PAP    PLPP T   P+   P RS
Sbjct: 37  PAFMEPAPVSKKPLPPPTRRLPRKPLPFRS 66


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 185 TPFGDGNFAAFGRCIQGSETHQEHQKIIETVQPTSLQPVL 66
           TP  DG    FG+ IQG  T +  +  +ET     + PV+
Sbjct: 122 TPHLDGKHVVFGKVIQGKSTVRTIEN-LETKNDDPVVPVV 160


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 259 WIXVCCITTKSIGLFRGCLRRDSVPLHSVMGISPHSD 149
           W+       +     +GCL++D+V +  + G+S   D
Sbjct: 117 WVLPHQFVVRICNQLKGCLKKDAVAISCIKGVSVTKD 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,041
Number of Sequences: 5004
Number of extensions: 69018
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)