Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N07
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.6  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   3.4  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    27   4.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   6.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   7.9  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   7.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   7.9  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 512 SGVIVYFFRERAVYSSRISKQFYFQIARSKGPYHSGGVP 396
           + +I+  +RE  +  ++I +  Y Q+   K  YH+   P
Sbjct: 639 NAIIISMYREHLISRTQIQELLYHQVPSEKAGYHTLRAP 677


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 601 ESPVKCWTLMKRRKSFHCWTHQRSXWALYA 690
           ++ +K W+L  ++  F    H  S WALY+
Sbjct: 237 DATIKLWSLRAQKCLFSFIAHSDSVWALYS 266


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 200 SYPNAAVSYDFEHFFRNTKSNTRSLPARL--IEECFVMYSPRAQRET 66
           S+ +A +SY    F +  K NT  LP+    I + +V Y   ++  T
Sbjct: 280 SFTHAPLSYSLPLFIQMYKQNTTGLPSNFSGISQLYVTYRVHSKNAT 326


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 549 TVRTQEYLRLHTLGKAMGIPSEVLDPHEAQK 641
           ++RT E +R + L  A G  + VL PH  ++
Sbjct: 216 SIRTDEVIRFYELEYAPGSTAAVLSPHNYRR 246


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 666 AFXMGSLRNGRRYYRSGDGLQCACXGLLXXTVP 764
           A  + +L    +YY  G GLQ A  G++  ++P
Sbjct: 383 AIQVETLTGDNKYYAEGHGLQDAHKGIIFESLP 415


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 423 LRPCDLE-VKLLRDSRTVYSALAKEVDDYAGW 515
           L P  +E ++LLRD +T +     +VD   GW
Sbjct: 586 LEPQTIESIRLLRDQKTPFVVALNKVDRLYGW 617


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 477 CIQFSNLEAILLPNRTVEGTIPFRRCAMSFR 385
           C+Q    EA L   RTV  T+ F R  M ++
Sbjct: 27  CLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQ 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,503
Number of Sequences: 5004
Number of extensions: 69328
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)