Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N07
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.52 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 637 RKSFHCWTHQRSXWALYATEDGTI--DPA 717
           +  +  W HQ   +A Y   DGTI  DPA
Sbjct: 180 KHDYRVWNHQLISYAGYKNPDGTIIGDPA 208


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 558 TQEYLRLHTLGKAMGIPSEVLD 623
           +Q YL +H+    + IPS  +D
Sbjct: 377 SQNYLTVHSFPSTLNIPSVKID 398


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 64  SVSRCALGEYITKHSSINRAGSDR 135
           SVS C+LG   +  S+ +   SDR
Sbjct: 172 SVSECSLGTASSTSSTASSRNSDR 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,112
Number of Sequences: 438
Number of extensions: 5251
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)