Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_N06
(919 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.014
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.057
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.075
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.014
Identities = 33/141 (23%), Positives = 42/141 (29%)
Frame = +3
Query: 486 SKRPGTVKXPRCWRFSIGSAPPERASQKSTLKSXVAKPDXTIKIPXVSPXXXXXXXXXXF 665
S G++ P R S PP R++ + + + P P
Sbjct: 345 SNAAGSIPLPPQGR-SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403
Query: 666 PTPARXTGYLSRPFXPXXXTPGXXPPXPHACXVSXXPXAXAXXXQPXXXXXPXPPPXPPX 845
P G SR P TP PP + S P A P PP P
Sbjct: 404 PP----LGNASRTSTPPVPTPPSLPP---SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456
Query: 846 XXXPXPXPLSPPXPXPRXXPP 908
P P +PP P PP
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPP 477
Score = 32.7 bits (71), Expect = 0.075
Identities = 29/118 (24%), Positives = 33/118 (27%), Gaps = 1/118 (0%)
Frame = +3
Query: 531 SIGSAPPERASQKSTLKSXVAKPDXTIKIPXVS-PXXXXXXXXXXFPTPARXTGYLSRPF 707
S G PP +S ++ P IP S P TP T P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPP----AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPS 426
Query: 708 XPXXXTPGXXPPXPHACXVSXXPXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXPLSPP 881
P P P P + A P P PP PP P P P P
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Frame = +2
Query: 773 SRXXGPPXPTXXXXXXXTPPXXXPXXXP------PXXPPLPP 880
SR PP PT PP P P P PPLPP
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.057
Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = +3
Query: 711 PXXXTPGXXPPXPHACXVSXXPXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXP--LSPPX 884
P P PP P + P PP P P P P +PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 885 PXPRXXPPL 911
P P PP+
Sbjct: 1134 PVPSGAPPV 1142
Score = 32.7 bits (71), Expect = 0.075
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Frame = +3
Query: 711 PXXXTPGXXPPXPHACXVSXXPXAXAXXXQPXXXXXPXPPPXPPXXXXPX-PXPLS--PP 881
P P PP P + A + P PP PP P P P PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 882 XPXPRXXPPL 911
P P PP+
Sbjct: 1210 VPPPSTAPPV 1219
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = +3
Query: 711 PXXXTPGXXPPXPHACXVSXX-PXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXPLS--PP 881
P P PP P + P P P P P P P P + PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 882 XPXPRXXPPL 911
P P PP+
Sbjct: 1191 VPPPSEAPPV 1200
Score = 29.5 bits (63), Expect = 0.70
Identities = 23/81 (28%), Positives = 25/81 (30%)
Frame = +3
Query: 666 PTPARXTGYLSRPFXPXXXTPGXXPPXPHACXVSXXPXAXAXXXQPXXXXXPXPPPXPPX 845
P PA +G P P P PP A V P P P P P
Sbjct: 1170 PVPAPSSGIPPVP-KPAAGVP-PVPPPSEAPPVPK-PSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 846 XXXPXPXPLSPPXPXPRXXPP 908
P P +PP P P P
Sbjct: 1227 PPVPVPTAKAPPVPAPSSEAP 1247
Score = 29.1 bits (62), Expect = 0.92
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Frame = +3
Query: 726 PGXXPPXPH-ACXVSXXPXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXP--LSPPXPXPR 896
P PP P + + P P P P P P P P P PP P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP-PVPKPSVAAPPVPKPSVAVPPVPAPS 1118
Query: 897 XXPPL 911
PP+
Sbjct: 1119 GAPPV 1123
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/63 (23%), Positives = 18/63 (28%)
Frame = +3
Query: 723 TPGXXPPXPHACXVSXXPXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXPLSPPXPXPRXX 902
+P PP H P P P P P +PP P P
Sbjct: 981 SPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTA 1040
Query: 903 PPL 911
PP+
Sbjct: 1041 PPV 1043
Score = 26.2 bits (55), Expect = 6.5
Identities = 35/131 (26%), Positives = 41/131 (31%), Gaps = 8/131 (6%)
Frame = +3
Query: 540 SAPPERASQKSTLKSXVAKPDXTIKIPXVS---PXXXXXXXXXXFPTPARXTGYLSRPFX 710
SAPP + S + S A P +P S P P P+ + P
Sbjct: 1061 SAPPPVPAPSSEIPSIPA-PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 711 -PXXXTPGXX-PPXPHACXVSXXPX-AXAXXXQPXXXXXPXPPPXPPXXXXPXPXPLS-- 875
P P PP P P + A P P P P P P P P S
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP-PVPKPSVAAPPVPAPSSGI 1178
Query: 876 PPXPXPRXXPP 908
PP P P P
Sbjct: 1179 PPVPKPAAGVP 1189
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.075
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +3
Query: 738 PPXPHACXVSXXPXAXAXXXQPXXXXX-PXPPPXPPXXXXPXPXPLSPPXP 887
PP P A V A P P PPP PP P P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 738 PPXPHACXVSXXPXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXPLSPPXPXP 893
PP P + P P PPP PP P PP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Frame = +3
Query: 825 PPPXPPXXXXPXPXP----LSPPXPXPRXXPP 908
PPP PP P P P + PP P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 801 PXXXXXPXPPPXPPXXXXPXPXPLSPPXPXPRXXPPL 911
P P PPP P P P P P PPL
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +3
Query: 774 PXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXPLSPPXPXPRXXPP 908
P A P P PP PP P P +PP P P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGP---PSAPPPPLPASSAP 1741
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -1
Query: 907 GGXXRGXGXGGERGXGXGXXXXGGXGGGXGXXXXXGW 797
GG G G GG G G G GG GGG G GW
Sbjct: 241 GGGPGGFG-GGLGGFGGGP---GGFGGGPGGHGGPGW 273
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 827 PPXXXPXXXPPXXPPLPPXP 886
PP P PP PP PP P
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 819 PXPPPXPPXXXXPXPXPLSPP 881
P PPP PP P P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 765 SXXPXAXAXXXQPXXXXXPXPPPXPPXXXXPXPXPLSPPXPXPRXXPPL 911
S P + P P P PP P P P S P P P PP+
Sbjct: 121 SAAPPSAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAP-PIPSKAPPI 167
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 904 GXXRGXGXGGERGXGXGXXXXGGXGGGXG 818
G RG GG G G GG GG G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -1
Query: 904 GXXRGXGXGGERGXGXGXXXXGGXGGG 824
G RG G GG RG G G GG GGG
Sbjct: 141 GGFRG-GRGGSRG-GFGGNSRGGFGGG 165
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 894 GGWGXGGRGGXXGGXXXGXXXG 829
GG+G G RGG GG G G
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGG 181
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 894 GGWGXGGRGGXXGGXXXGXXXG 829
GG+G G RGG GG G G
Sbjct: 168 GGFGGGSRGGSRGGFRGGSRGG 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,659
Number of Sequences: 5004
Number of extensions: 46999
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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