Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_N04
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   4.1  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   7.1  
07_03_0890 - 22332768-22333382                                         29   7.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   7.1  
07_03_0028 + 12611734-12612522                                         28   9.4  
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881...    28   9.4  
01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667           28   9.4  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/56 (28%), Positives = 18/56 (32%)
 Frame = +3

Query: 699 PPXPXKXAXEKHPPXXGRPXGXXXXPXXGNPXXXXPHKPXLTTPXXLXFLLSPAPP 866
           PP P + A    PP  G P      P    P    PH+P             P PP
Sbjct: 30  PPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPP 85


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/58 (31%), Positives = 18/58 (31%)
 Frame = +1

Query: 694  GPPPXXXXXPXKNTPLXXGXPXGXXXGPXXXTPXXXXPTNHX*PPXXXFXFYCXPPPP 867
            GPPP     P    PL  G P      P    P    P     PP         PPPP
Sbjct: 1128 GPPPLPLDAPPP-PPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPP 1184


>07_03_0890 - 22332768-22333382
          Length = 204

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 653 PPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
           PP P      A    PPPP    P  TPP
Sbjct: 90  PPPPERAVPEAADTPPPPPPPTAPTPTPP 118


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 653 PPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
           PP P      A    PPPP K  P   PP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPP 341


>07_03_0028 + 12611734-12612522
          Length = 262

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKT 733
           P RGG     PTP           PPPP      KT
Sbjct: 43  PFRGGGGSTTPTPQRPVKAGSSSSPPPPPTTAMDKT 78


>01_05_0224 +
           19485296-19485493,19485584-19487817,19487903-19488154,
           19488235-19488345,19488435-19488516,19488791-19488982
          Length = 1022

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 18/57 (31%), Positives = 21/57 (36%)
 Frame = +3

Query: 696 APPXPXKXAXEKHPPXXGRPXGXXXXPXXGNPXXXXPHKPXLTTPXXLXFLLSPAPP 866
           APP P K    +HPP    P      P    P      +P L TP  +    SP  P
Sbjct: 569 APPSPPKPPSPRHPP---SPPPLRSPPRQPTPPPSPSQQPPLPTPQPVQ--ASPTSP 620


>01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667
          Length = 567

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 384 ILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPA 274
           +LKL  R   T+I  V+ ++ FPI     +T+I  PA
Sbjct: 206 VLKLGRRTGGTAIRVVQVENSFPIGACINKTAIQNPA 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,811
Number of Sequences: 37544
Number of extensions: 400694
Number of successful extensions: 1078
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)