Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_N04
(947 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 0.91
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.6
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 29 3.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 4.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 4.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 4.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.9
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.5 bits (68), Expect = 0.91
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPP 709
P RGG PP P G GPPPP
Sbjct: 773 PPRGGMHHMPPPPSFRGGRGGHGGPPPP 800
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +2
Query: 617 GXXPXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTPPXFXA 751
G P G PP P + AG PPPP G PP F A
Sbjct: 72 GFIPPPPGPGGIPPPPP---MFAGGIPPPPPMMGGIPPPPPMFGA 113
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 617 GXXPXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
G P GG PP + G PPPP P PP
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGP 724
P GG PP P G PPPP P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 617 GXXPXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
G P GG PP + G PPPP P PP
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGP 724
P GG PP P G PPPP P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 617 GXXPXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
G P GG PP + G PPPP P PP
Sbjct: 317 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGP 724
P GG PP P G PPPP P
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 387 YILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPALTMP 262
++L L+ L S Y + K HFP TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 653 PPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
PP P AG PPPP +TPP
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPP 151
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +1
Query: 682 GXXXGPPPXXXXXPXKNTPLXXGXPXGXXXG--PXXXTPXXXXPTNHX*PPXXXFXFYCX 855
G GPPP P G P G G P P PP Y
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGY 734
Query: 856 PPPPXXG 876
PPPP G
Sbjct: 735 PPPPQPG 741
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +1
Query: 682 GXXXGPPPXXXXXPXKNTPLXXGXPXGXXXG--PXXXTPXXXXPTNHX*PPXXXFXFYCX 855
G GPPP P G P G G P P PP Y
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGY 734
Query: 856 PPPPXXG 876
PPPP G
Sbjct: 735 PPPPQPG 741
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 602 GXRGXGXXPXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTP 736
G RG P G PP P AG PPPP G P
Sbjct: 224 GFRGKRQAPPAGSPPPPPP-PKGSPPLAGSGSPPPPPAAGSPPPP 267
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
P R G PPT AG PPPP P PP
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 602 GXRGXGXXPXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTP 736
G RG P G PP P AG PPPP G P
Sbjct: 245 GFRGKRQAPPAGSPPPPPP-PKGSPPLAGSGSPPPPPAAGSPPPP 288
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
P R G PPT AG PPPP P PP
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 602 GXRGXGXXPXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTP 736
G RG P G PP P AG PPPP G P
Sbjct: 230 GFRGKRQAPPAGSPPPPPP-PKGSPPLAGSGSPPPPPAAGSPPPP 273
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 626 PXRGGXXXXPPTPXXXXLXAGXXGPPPPXKXGPXKTPP 739
P R G PPT AG PPPP P PP
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGSPPPPPP 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,477
Number of Sequences: 27780
Number of extensions: 343471
Number of successful extensions: 920
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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