Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M24
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    30   0.52 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.69 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   9.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    22   9.5  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = -2

Query: 892 GXWGDXVGSGXXGWGXXGXLGXGXGXGVXGCXGGGXYVXSRGXXXGGRLG 743
           G  G   G G    G  G    G G G  G  GGG    SRG   GG  G
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +2

Query: 218 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE-IVQSYFPIQFX 394
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE  +Q    I   
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKEQDIQDELRIANK 187

Query: 395 VIFTEQTVXLINKRDHHALKL 457
             + E+   L   R  H  K+
Sbjct: 188 DGYVERQEFLAKTRAAHEEKI 208


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 185 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 301
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = -3

Query: 285 TASLITSPFFSFRYSEHLAIAVSYSPMT---TLIYSCSASTSSVLGASVALEASAHSGRG 115
           ++S  +S   S + S   +  VS S  T   TL  S S+S+     +S +   S+H    
Sbjct: 351 SSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSS 410

Query: 114 RRQTKSVSSWRSGYHLKASQQTTSKS 37
             ++ S     + YH   S +++S S
Sbjct: 411 SSKSSSAPVSSAFYHNSTSSRSSSHS 436


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +2

Query: 689 PLXPPXTXTDAXXPSVLXXETSXXXXTPXSXIXAPXXTPXXPXPPPPP 832
           P  PP     A     L          P     AP   P  P PPP P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 9.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 803 PXXPXPPPPP 832
           P  P PPPPP
Sbjct: 942 PAFPPPPPPP 951



 Score = 21.0 bits (42), Expect(2) = 9.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 812 PXPPPPPQXS 841
           P PPPPP  S
Sbjct: 947 PPPPPPPLVS 956


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.2 bits (45), Expect(2) = 9.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 782 IXAPXXTPXXPXPPPPP 832
           I  P   P    PPPPP
Sbjct: 749 IPVPPPAPIMGGPPPPP 765



 Score = 21.4 bits (43), Expect(2) = 9.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 812 PXPPPPPQXS 841
           P PPPPP  S
Sbjct: 777 PPPPPPPAVS 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,218
Number of Sequences: 5004
Number of extensions: 49671
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)