Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_M23
(1041 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.007
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.088
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.15
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.27
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.62
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 2.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 2.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 5.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 6.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.6
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXSSPPXXPKPPXPTXLXRKXXXXSP 714
PP PPP P PP PP P PP P +K +P
Sbjct: 5 PPGNPPP---PPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.088
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 595 PPSXP-PPT-SXPXXPPXSSPPXXPKPPXPTXLXRKXXXXSPXVXXXXPPPS 744
PPS P PPT PP S+PP PP +P + PPP+
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA 175
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXSSPPXXPKPPXP 678
P S PPP S P P + PP P PP P
Sbjct: 1711 PMSVPPPPSAPPMP--AGPPSAPPPPLP 1736
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXSSPPXXPKPPXP 678
PP PT P PP S PP PP P
Sbjct: 1699 PPQMSAPTPPP--PPMSVPPPPSAPPMP 1724
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 607 PPPTSXPXXPPXSSPPXXPKPP 672
PPP PP S+PP PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Frame = +1
Query: 595 PPSXPP----PTSXPXXP-PXSSPPXXPKP 669
PPS PP P S P P P SS P P P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.27
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 598 PSXPPPTSXPXXPPXSSPPXXPKPPXPTXLXRKXXXXSPXVXXXXPPPSNFXP 756
P P PTS P P SS PP P +P P PS P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +1
Query: 598 PSXPPPTSXPXXPPXSSPPXXPKPPXPTXLXRKXXXXSPXVXXXXPPPSNFXP 756
PS P P+ P P S P PKP K P V P PS P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPV----PAPSGAPP 1122
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXSSPPXXPKP 669
PP P P PP S P PKP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXSSPPXXPKPPXPT 681
PPS PP P PP PP PT
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXSSPPXXPKP 669
PP P P PP S+ P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.62
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -2
Query: 677 GXGGFGXXGGE--EXGGXXGXDVG-GGXEGG 594
G GGFG GGE GG G G GG EGG
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 677 GXGGFGXXGGEEXGGXXGXDVGGGXEGG 594
G GGFG G GG G G G GG
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 607 PPPTSXPXXPPXSSPPXXPKPPXPTXL 687
P P+ P S+PP P PP P L
Sbjct: 256 PKPSESPRRSVSSTPPVHPPPPVPQNL 282
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 610 PPTSXPXXPPXSSPPXXPKPPXP 678
P TS P P +PP P PP P
Sbjct: 487 PGTSAPLPPTTFAPPGVPLPPIP 509
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXSSPPXXPKP 669
PP PPP++ P +SPP P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAP 277
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +1
Query: 595 PPSXPPPTSXPXXPPXS-SPPXXPKPP 672
PP PP S P P S P P+PP
Sbjct: 371 PPQLPPSPSSPSSPALSVKPNIDPQPP 397
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.6 bits (46), Expect(2) = 6.7
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 523 SXNXAXSXXXXPXXXXXXXQXFXXPPSXPPPTSXPXXPPXSSPP 654
S A S P PP PPPT P S P
Sbjct: 214 SSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP 257
Score = 21.8 bits (44), Expect(2) = 6.7
Identities = 12/41 (29%), Positives = 15/41 (36%)
Frame = +1
Query: 634 PPXSSPPXXPKPPXPTXLXRKXXXXSPXVXXXXPPPSNFXP 756
PP ++P P+PP R S PPS P
Sbjct: 274 PPPATPSQPPRPP-TNASTRSTGTSSSMAHSYDSPPSPSSP 313
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +1
Query: 601 SXPPPTSXPXXPPXSSPPXXPKPPXPTXLXRKXXXXSPXVXXXXPPP 741
S PPP P + P PP P P V PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,451
Number of Sequences: 5004
Number of extensions: 11731
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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