Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M19
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.041
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 524 NTXTPPPXPXPXTAARGS-PLYLKGLXGXPHPDPXTXDXLWPXPXXTMPXTKKRFLX*PX 700
           N+  PPP P P + A GS PL  +G    P P P +       P    P +  R +  P 
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP---PLSSSRAVSNPP 389

Query: 701 AXPXAL 718
           A P A+
Sbjct: 390 APPPAI 395


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 529  PHPPPXTXXXYRGPRIXPXPXGXXWAPPP 615
            P PPP        P   P P G   APPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 536 PPPXPXPXTAARGSPLYLKGLXGXPHP 616
           PPP P P  +A GS  Y       P P
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAPQAEPEP 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,080
Number of Sequences: 5004
Number of extensions: 37901
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)