Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_M18
(1263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 43 1e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.003
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 35 0.027
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.063
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.15
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.15
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.78
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 7.2
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 42.7 bits (96), Expect = 1e-04
Identities = 29/87 (33%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Frame = +2
Query: 560 GXRGGXGXXXXGXRGXTNXGPXXXGGGXXXGGEXXXRXRRXRXGXAXGGEXGXXGGXXG- 736
G GG G G GP GG GGE G GG G GG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 737 ----XGXXXGXGGXPGQXXGRXGGXXG 805
G G GG PG G GG G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 40.3 bits (90), Expect = 5e-04
Identities = 28/83 (33%), Positives = 29/83 (34%)
Frame = +2
Query: 524 GXXGGGXXGXXXGXRGGXGXXXXGXRGXTNXGPXXXGGGXXXGGEXXXRXRRXRXGXAXG 703
G GGG G G G G G G + G GGG G E G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG-PGGFEGGPGGFGGGPGGFGG 249
Query: 704 GEXGXXGGXXGXGXXXGXGGXPG 772
G G GG G G G G PG
Sbjct: 250 GLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.9 bits (84), Expect = 0.003
Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Frame = -3
Query: 808 PPXXPPXPPXRLXGXSPXPL----RXPXPXXXSPXAXFSPXCXXXSXPPXXPXXLXXX-P 644
PP PP P R P PL R P +P + P S PP P L P
Sbjct: 388 PPAPPPAIPGRSAPALP-PLGNASRTSTPPVPTPPSL--PPSAPPSLPPSAPPSLPMGAP 444
Query: 643 XPPAXXXRAXVGXAPXXPXAXPXPPXXXPXXXXPXPPPXPPP 518
P A + AP P P P P P P P P P
Sbjct: 445 AAPPLPPSAPI--APPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 34.7 bits (76), Expect = 0.027
Identities = 24/87 (27%), Positives = 25/87 (28%)
Frame = -1
Query: 981 PXRSSXXXXXSPLPXPAPRXPXAXXXXRAAGXXGXXPPRXPSPXXGXSXXPXXXXXXXPP 802
P SS P P PA A P P+P P PP
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Query: 801 XLPPXLPXXXPGXPPXPXXXPLPXXPP 721
LP P P P P PLP P
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 33.9 bits (74), Expect = 0.048
Identities = 42/176 (23%), Positives = 44/176 (25%), Gaps = 4/176 (2%)
Frame = -1
Query: 948 PLPXPAPRXPXAXXXXRAAGXXGXXPPRXPSPXXGXSXXPXXXXXXX----PPXLPPXLP 781
PLP P+ R A A PP P P P PP PP
Sbjct: 291 PLPPPSSRVSAA-----ALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345
Query: 780 XXXPGXPPXPXXXPLPXXPPXXXXXXXXXXXXXXXXXXXXXXXPXXXPPPXXXGPXLVXP 601
P P P PP P PPP G
Sbjct: 346 NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPA--PPPAIPGRS-APA 402
Query: 600 LXPXXXXPXPPRXPXXXPXXPPPXXPRRSXXXXPPSFXXXGXXSPLLXPPXPPXPP 433
L P P P PP P PPS +P L P P PP
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 33.1 bits (72), Expect = 0.083
Identities = 32/128 (25%), Positives = 35/128 (27%), Gaps = 7/128 (5%)
Frame = -3
Query: 796 PPXPPXRLXGXSPXPLRXPXPXXXSPXAXFSPXCXXXSXPPXXPXXLXXXPXPPAXXXRA 617
PP PP R +P R P P S P + PP P P R
Sbjct: 361 PPPPPPR---SAPSTGRQPPPLSSSRAVSNPP-----APPPAIPGRSAPALPPLGNASRT 412
Query: 616 XVGXAPXXPXAXPXPPXXXPXXXXPX-------PPPXPPPLXXXPSPXVXLXRXXXSPAX 458
P P P P P P PP PP P + P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 457 AXXPPXXP 434
A PP P
Sbjct: 473 APAPPPAP 480
Score = 32.3 bits (70), Expect = 0.15
Identities = 51/237 (21%), Positives = 56/237 (23%), Gaps = 11/237 (4%)
Frame = -1
Query: 1176 PPXXSPRPSXPXXXXPFAXXPPAAXXPSPXSRXAXXXXXXXXXXXXXXXXXXXXXXXPXX 997
PP PRP P P P P SR +
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNR---- 322
Query: 996 FXGXTPXRSSXXXXXSPLPXPAPRXPXAXXXXRAAGXXGXXPPRXP--SPXXGXSXXP-- 829
G P + P P P PR A PP P +P G P
Sbjct: 323 --GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS 380
Query: 828 XXXXXXXPPXLPPXLP-XXXPGXPP-----XPXXXPLPXXPPXXXXXXXXXXXXXXXXXX 667
PP PP +P P PP P+P P
Sbjct: 381 SSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Query: 666 XXXXXPXXXPPPXXXGPXLVXPLXPXXXXPXPPRXPXXXP-XXPPPXXPRRSXXXXP 499
PP P L P P PP P P P P P S P
Sbjct: 441 MGAPAAPPLPPSAPIAPPL--PAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -3
Query: 604 APXXPXAXPX--PPXXXPXXXXPXPPPXPPP 518
AP P + P PP P P PPP PPP
Sbjct: 229 APPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259
Score = 30.3 bits (65), Expect = 0.59
Identities = 34/173 (19%), Positives = 37/173 (21%)
Frame = -1
Query: 948 PLPXPAPRXPXAXXXXRAAGXXGXXPPRXPSPXXGXSXXPXXXXXXXPPXLPPXLPXXXP 769
P P P+ R + PP P P P PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 768 GXPPXPXXXPLPXXPPXXXXXXXXXXXXXXXXXXXXXXXPXXXPPPXXXGPXLVXPLXPX 589
G P P P P P P L P
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP--PSLPPSAPPS 430
Query: 588 XXXPXPPRXPXXXPXXPPPXXPRRSXXXXPPSFXXXGXXSPLLXPPXPPXPPP 430
PP P P PP P P+ P P PP P P
Sbjct: 431 LPPSAPPSLPMGAPAAPP-LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/105 (21%), Positives = 28/105 (26%), Gaps = 2/105 (1%)
Frame = -3
Query: 808 PPXXPPXP--PXRLXGXSPXPLRXPXPXXXSPXAXFSPXCXXXSXPPXXPXXLXXXPXPP 635
PP PP P P + + P P S + + PP P PP
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Query: 634 AXXXRAXVGXAPXXPXAXPXPPXXXPXXXXPXPPPXPPPLXXXPS 500
+ P P P P PPP PS
Sbjct: 327 IGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.027
Identities = 23/78 (29%), Positives = 26/78 (33%)
Frame = -1
Query: 639 PPPXXXGPXLVXPLXPXXXXPXPPRXPXXXPXXPPPXXPRRSXXXXPPSFXXXGXXSPLL 460
PP + P P P P + P PPP P + PPS P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP-AAPVKSPPS----APSLPSA 193
Query: 459 XPPXPPXPPPXVLXXGXV 406
PP PP PP L V
Sbjct: 194 VPPMPPKVPPPPLSQAPV 211
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 581 PPPPXAXPXPXXXXPPPXSPAAXXXSXPXRSFXPXXXLP 465
PP P P PPP PAA S P P P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = -1
Query: 873 PPRXPSPXXGXSXXPXXXXXXXPPXLPPXLPXXXPGXPPXPXXXPLPXXPP 721
PP P+P S P +PP P P P P PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.5 bits (73), Expect = 0.063
Identities = 25/71 (35%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Frame = +2
Query: 521 RGXXGG--GXXGXXXGXRGGXGXXXXGXRGXTNXGPXXXGGGXXXGGEXXXRXRRXRXGX 694
RG GG G G G RGG G G RG G G GG R G
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGGARGG--------GRGGARGGRGGRGGARGGRGG 59
Query: 695 AXGGEXGXXGG 727
+ GG G GG
Sbjct: 60 SSGGRGGAKGG 70
Score = 33.1 bits (72), Expect = 0.083
Identities = 28/72 (38%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +2
Query: 560 GXRGGXGXXXXGXRGXTNXGPXXXGGGXXXGGEXXXRXRRXRXGXAXGGEXGXXGGXXG- 736
G RGG G G RG N G GGG GG R G A GG G G G
Sbjct: 6 GSRGGRGGSRGG-RGGFNGGRGGFGGGR--GGA-----RGGGRGGARGGRGGRGGARGGR 57
Query: 737 XGXXXGXGGXPG 772
G G GG G
Sbjct: 58 GGSSGGRGGAKG 69
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/60 (35%), Positives = 23/60 (38%)
Frame = +2
Query: 461 SRGXXXPXQXNXGGXXXXERRGXXGGGXXGXXXGXRGGXGXXXXGXRGXTNXGPXXXGGG 640
SRG GG RG GG G G RGG G G RG ++ G GG
Sbjct: 14 SRGGRGGFNGGRGGFGGG--RGGARGGGRGGARGGRGGRG-GARGGRGGSSGGRGGAKGG 70
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.15
Identities = 31/132 (23%), Positives = 36/132 (27%), Gaps = 10/132 (7%)
Frame = -3
Query: 808 PPXXPPXPPXRLXGXSPXPLRXPXPXXXSPXAXFSPXCXXXSXPPXXPXXLXXXPXP--- 638
P PP P + P P+ P P P PP + P P
Sbjct: 1117 PSGAPPVPKPSVAAP-PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
Query: 637 ----PAXXXRAXVGXAPXXPXAXPXPPXXXPXXXXPXP---PPXPPPLXXXPSPXVXLXR 479
P A V P A P P P P PP P P P V +
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235
Query: 478 XXXSPAXAXXPP 443
PA + P
Sbjct: 1236 APPVPAPSSEAP 1247
Score = 31.9 bits (69), Expect = 0.19
Identities = 29/127 (22%), Positives = 31/127 (24%), Gaps = 2/127 (1%)
Frame = -3
Query: 808 PPXXPPXPPXRLXGXSPXPLRXPXPXXXSPXAXFSPXCXXXSXPPXXPXXLXXXPXPPAX 629
P P P P P P P +P S P P P PA
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVA-APPVPVPSGAPPVPKPSVAAPPVPAP 1155
Query: 628 XXRAXVGXAPXXPXAXPXPPXXXPXXXXPXP--PPXPPPLXXXPSPXVXLXRXXXSPAXA 455
V P P P P PP PPP P P + P
Sbjct: 1156 SGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Query: 454 XXPPXXP 434
P P
Sbjct: 1216 APPVPTP 1222
Score = 28.3 bits (60), Expect = 2.4
Identities = 34/164 (20%), Positives = 38/164 (23%), Gaps = 6/164 (3%)
Frame = -1
Query: 1197 SXRPXXPPPXXSPRPSXPXXXXPFAXXP---PAAXXPSPXSRXAXXXXXXXXXXXXXXXX 1027
S P PPP +P P P P P+ P P A
Sbjct: 1057 SGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA 1116
Query: 1026 XXXXXXXPXXFXGXTPXRSSXXXXXSPLPXPAPRXPXAXXXXRAAGXXGXXPPRXPSPXX 847
P P P P A A P P+P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 846 GXSXXPXXXXXXXP---PXLPPXLPXXXPGXPPXPXXXPLPXXP 724
G P P P P +P G PP P P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -3
Query: 685 SXPPXXPXXLXXXPXPPAXXXRAXVGXAPXXPXAXPXPPXXXPXXXXPXPPPXPPP 518
S PP P + P P AP P PP P PPP PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPP---APIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.15
Identities = 24/76 (31%), Positives = 26/76 (34%)
Frame = -1
Query: 639 PPPXXXGPXLVXPLXPXXXXPXPPRXPXXXPXXPPPXXPRRSXXXXPPSFXXXGXXSPLL 460
PPP P ++ P P PP P PPP PP G
Sbjct: 732 PPPPP--PAVIVPTPAPAPIPVPPPAPIMGGPPPPPP---------PPGVAGAG------ 774
Query: 459 XPPXPPXPPPXVLXXG 412
PP PP PPP V G
Sbjct: 775 -PPPPPPPPPAVSAGG 789
Score = 30.3 bits (65), Expect = 0.59
Identities = 23/79 (29%), Positives = 26/79 (32%)
Frame = -3
Query: 808 PPXXPPXPPXRLXGXSPXPLRXPXPXXXSPXAXFSPXCXXXSXPPXXPXXLXXXPXPPAX 629
PP PP +P P+ P P P P + PP P P PPA
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP------PPPPAV 785
Query: 628 XXRAXVGXAPXXPXAXPXP 572
AP P A P P
Sbjct: 786 SAGGSRYYAP-APQAEPEP 803
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.78
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 592 PXAXPXPPXXXPXXXXPXPPPXPPP 518
P P PP P P PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -3
Query: 601 PXXPXAXPXPPXXXPXXXXPXPPP 530
P P P PP P P PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 220 PPPLFXXPXLPPPPXFP 170
PPP F P PPPP P
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = -1
Query: 858 SPXXGXSXXPXXXXXXXPPXLPPXLPXXXP-GXPPXPXXXPLPXXPP 721
+P S P PP + P P PP P P+P PP
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -1
Query: 636 PPXXXGPXLVXPLXPXXXXPXPPRXPXXXPXXPPPXXPRRSXXXXPPSFXXXGXXSPLL 460
PP P P P P P P PPP P S PS G S LL
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS----APSVPNPGDRSALL 1753
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = -3
Query: 610 GXAPXXPXAXPXP-PXXXPXXXXPXPPPXPPPLXXXPSPXVXLXRXXXSPAXAXXPP 443
G AP P + P P P P PPP+ P P P A PP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA--PPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 9.6
Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Frame = -1
Query: 897 AAGXXGXXPPRXP---SPXXGXSXXPXXXXXXXPPXLPPXLPXXXPGXPPXPXXXPLPXX 727
AA G P P P S P PP P +P P PP P P
Sbjct: 1674 AAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPP-PSAPPMPAGPPSAPP 1732
Query: 726 PP 721
PP
Sbjct: 1733 PP 1734
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = -2
Query: 581 PPPPXAXPXPXXXXPPPXSPAAXXXSXPXRSFXPXXXLPCSR 456
PPPP + P P P P P + S P P R
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/55 (25%), Positives = 17/55 (30%)
Frame = -3
Query: 592 PXAXPXPPXXXPXXXXPXPPPXPPPLXXXPSPXVXLXRXXXSPAXAXXPPXXPXF 428
P + P P P PPP PPP + S A P P +
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTY 227
Score = 26.6 bits (56), Expect = 7.2
Identities = 23/93 (24%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Frame = -3
Query: 763 SPXPLRXPXPXXXSPXAXFSPXCXXXSXPPXXPXXLXXXPXPPAXXXRAXVGXAPXX--- 593
+P + P P P A P P P PPA +A P
Sbjct: 160 APNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP-----PPPPAVEDQAADANEPDDYYS 214
Query: 592 ---PXAXPXPPXXXPXXXXPXPPPXPPPLXXXP 503
+ PP P P P P PPP P
Sbjct: 215 SGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLP 247
Score = 26.2 bits (55), Expect = 9.6
Identities = 24/86 (27%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Frame = -1
Query: 639 PPPXXXGPXLVXPLX--PXXXXPXPPRXPXXXPXXPPPXXPRRSXXXXPPSFXXXGXX-S 469
PPP P P P P PP P PP + + P + G S
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPP------PPPPPAVEDQAADANEPDDYYSSGRAVS 220
Query: 468 PLLXP----------PXPPXPPPXVL 421
P + P P PP PPP L
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTL 246
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +2
Query: 497 GGXXXXERRGXXGGGXXGXXXGXRGG-XGXXXXGXRG 604
GG R G GG G G RGG G G RG
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188
Score = 26.2 bits (55), Expect = 9.6
Identities = 22/69 (31%), Positives = 23/69 (33%)
Frame = +2
Query: 518 RRGXXGGGXXGXXXGXRGGXGXXXXGXRGXTNXGPXXXGGGXXXGGEXXXRXRRXRXGXA 697
R G G G G G RGG G G G + G GG GG R G
Sbjct: 131 RNGPAGRGGRG---GFRGGRGGSRGGFGGNSRGG----FGGGSRGGFGGGSRGGSRGGFR 183
Query: 698 XGGEXGXXG 724
G G G
Sbjct: 184 GGSRGGFRG 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,547
Number of Sequences: 5004
Number of extensions: 22173
Number of successful extensions: 231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
- SilkBase 1999-2023 -