Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_M17
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 203 2e-53
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 198 6e-52
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.38
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 29 0.67
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 6.2
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 8.2
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 203 bits (496), Expect = 2e-53
Identities = 103/188 (54%), Positives = 121/188 (64%)
Frame = +1
Query: 91 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 270
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 271 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 450
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 451 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVXVGHVDMTPDXLAQN 630
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL V VGHVDM + LA N
Sbjct: 122 LLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAAN 181
Query: 631 VHLSINFL 654
+ L+INFL
Sbjct: 182 LSLAINFL 189
Score = 45.6 bits (103), Expect = 9e-06
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +2
Query: 653 LVSLLKKHWQNVRSLHMKSTMGPPXRLY 736
LVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 189 LVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 198 bits (484), Expect = 6e-52
Identities = 100/188 (53%), Positives = 122/188 (64%)
Frame = +1
Query: 91 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 270
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 271 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 450
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 451 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVXVGHVDMTPDXLAQN 630
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL V VGHV+M+ + L N
Sbjct: 122 LLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIAN 181
Query: 631 VHLSINFL 654
+ L++NFL
Sbjct: 182 IMLAVNFL 189
Score = 45.6 bits (103), Expect = 9e-06
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +2
Query: 653 LVSLLKKHWQNVRSLHMKSTMGPPXRLY 736
LVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 189 LVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 73 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 237
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 29.5 bits (63), Expect = 0.67
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +1
Query: 424 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVXV 591
+ +I +PR+LG + K P + E + +++ G F +
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203
Query: 592 GHVDMTPDXLAQNVHLSINFL 654
GHV T LA+NV + F+
Sbjct: 204 GHVSNTSTELAENVESILQFV 224
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -2
Query: 313 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 134
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 133 RHSRTRRACH 104
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 537 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 430
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,540
Number of Sequences: 5004
Number of extensions: 64442
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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