Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M17
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   224   8e-59
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   183   1e-46
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   138   6e-33
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    32   0.63 
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   4.4  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  224 bits (547), Expect = 8e-59
 Identities = 107/188 (56%), Positives = 131/188 (69%)
 Frame = +1

Query: 91  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 270
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 271 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 450
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 62  MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121

Query: 451 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVXVGHVDMTPDXLAQN 630
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSV VGHV +T + L  N
Sbjct: 122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 181

Query: 631 VHLSINFL 654
           + LSINFL
Sbjct: 182 ISLSINFL 189



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +2

Query: 653 LVSLLKKHWQNVRSLHMKSTMGPPXRLY 736
           LVSLLKK+WQNVRSL++KSTMG P R+Y
Sbjct: 189 LVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  183 bits (446), Expect = 1e-46
 Identities = 86/152 (56%), Positives = 104/152 (68%)
 Frame = +1

Query: 199 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 378
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 379 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 558
                         SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127

Query: 559 MKKVLCLSVXVGHVDMTPDXLAQNVHLSINFL 654
           MKKVLCLSV VGHV +T + L  N+ LSINFL
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFL 159



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +2

Query: 653 LVSLLKKHWQNVRSLHMKSTMGPPXRLY 736
           LVSLLKK+WQNVRSL++KSTMG P R+Y
Sbjct: 159 LVSLLKKNWQNVRSLNIKSTMGKPQRVY 186


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  138 bits (333), Expect = 6e-33
 Identities = 67/128 (52%), Positives = 81/128 (63%)
 Frame = +1

Query: 271 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 450
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 451 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVXVGHVDMTPDXLAQN 630
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSV VGHV +T + L  N
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120

Query: 631 VHLSINFL 654
           + LSINFL
Sbjct: 121 ISLSINFL 128



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +2

Query: 653 LVSLLKKHWQNVRSLHMKSTMGPPXRLY 736
           LVSLLKK+WQNVRSL++KSTMG P R+Y
Sbjct: 128 LVSLLKKNWQNVRSLNIKSTMGKPQRVY 155


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 666 SSDTKEVDGKMHILSKXIRSHVHMXNXYRKTQHLLHLELNGS--LDFINLLRHGLLVGEK 493
           S +T   D + + L K     + + + +R    + HLEL GS  L+FI LL    L  +K
Sbjct: 322 SFETFHCDFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKK 378

Query: 492 TREFTSFVQTGTQQTGN 442
            R+ T F   G    GN
Sbjct: 379 LRKLTIFATVGDVNNGN 395


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 148 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 258
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,459,637
Number of Sequences: 27780
Number of extensions: 377563
Number of successful extensions: 828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)